Skip to main content

Table 1 Genes identified as differentially abundant between 5 and 50 nM T4 at Day 2

From: Effect of thyroid hormone concentration on the transcriptional response underlying induced metamorphosis in the Mexican axolotl (Ambystoma)

Gene

Probe-set ID

Contig ID

t

P

Fold Change

Actin, alpha, cardiac muscle

SRV_12180_x_at

TC01592

-4.17

0.0004

-8.91

N/A

SRV_07408_at

MC07291

-2.49

0.0209

-2.83

Solute carrier family 7, member 3

SRV_04996_at

MC04879

-2.33

0.0295

-2.47

Lipopolysaccharide-induced TNF factor

SRV_05921_at

MC05804

-2.66

0.0144

-2.38

N/A

SRV_09913_at

MC09796

-2.98

0.0069

-2.22

Regulator of G-protein signaling 5

SRV_01913_a_at

MC01801

-2.35

0.0283

-2.18

Cadherin 1, type 1, E-cadherin

SRV_11961_at

TC01382

4.19

0.0004

5.65

ATP-binding cassette, sub-family B, member 4

SRV_10722_at

TC00206

3.11

0.0051

5.64

N/A

SRV_05709_at

MC05592

3.84

0.0009

4.79

N/A

SRV_05710_a_at

MC05593

4.93

< 0.0001

4.78

N/A

SRV_10033_at

MC09916

3.90

0.0008

3.25

Solute carrier family 6, member 14

SRV_03196_a_at

MC03084

2.79

0.0108

3.00

N/A

SRV_10338_at

MC10221

2.69

0.0134

2.63

N/A

SRV_07637_at

MC07520

2.80

0.0104

2.44

Transglutaminase 1

SRV_00309_at

MC00197

2.69

0.0134

2.28

Phosphoenolpyruvate carboxykinase 1

SRV_01492_at

MC01380

2.57

0.0177

2.24

N/A

SRV_08888_at

MC08771

2.28

0.0324

2.04

N/A

SRV_07731_at

MC07614

2.39

0.0258

2.04

Adipose differentiation-related protein

SRV_00744_a_at

MC00632

2.06

0.0501

1.89

Chemokine ligand 5

SRV_01687_at

MC01575

2.81

0.0102

1.72

N/A

SRV_07816_a_at

MC07699

2.32

0.0304

1.68

N/A

SRV_05752_at

MC05635

3.11

0.0051

1.64

Heterogeneous nuclear ribonucleoprotein L-like

SRV_05212_a_at

MC05095

2.59

0.0168

1.57

Transmembrane protein 79

SRV_04923_at

MC04806

2.19

0.0396

1.53

N/A

SRV_07996_at

MC07879

2.81

0.0102

1.51

N/A

SRV_06589_at

MC06472

2.05

0.0525

1.44

N/A

SRV_05658_a_at

MC05541

2.17

0.0410

1.43

Solute carrier family 11, member 1

SRV_00441_at

MC00329

2.32

0.0301

1.34

Dystroglycan 1

SRV_02177_at

MC02065

2.44

0.0232

1.30

Mitogen-activated protein kinase kinase 3

SRV_05297_at

MC05180

2.32

0.0303

1.20

  1. N/A refers to genes that do not have established orthologies to human. Probe-set ID represents the unique identifier for each probe-set on the custom Ambystoma GeneChip. Contig ID represents the Sal-Site [52] identifier for contigs associated with each probe-set. All fold changes are relative to the 5 nM dataset. Thus positive values are up regulated in 50 nM samples relative to 5 nM samples and negative values are down regulated in 50 nM samples relative to 5 nM samples.