From: A comparative study of different machine learning methods on microarray gene expression data
1. Lymphoma (De vos et.al, 2002) | # Genes | SVM | RBF | MLP | Bayesian | J48 | ID3 | R. Forest | Bagging |
---|---|---|---|---|---|---|---|---|---|
SVM-RFE | 50 | 100.00 | 96.00 | 80.00 | 92.00 | 88.00 | 92.00 | 64.00 | 64.00 |
CFS | 50 | 96.00 | 88.00 | 76.00 | 88.00 | 68.00 | 84.00 | 64.00 | 64.00 |
ChiSquared | 50 | 96.00 | 84.00 | 72.00 | 92.00 | 72.00 | 80.00 | 80.00 | 80.00 |
All features | 7129 | 96.00 | 84.00 | 68.00 | 88.00 | 64.00 | 76.00 | 48.00 | 52.00 |
2. Breast (Perou et. al, 2000) | # Genes | SVM | RBF | MLP | Bayesian | J48 | ID3 | R. Forest | Bagging |
SVM-RFE | 50 | 100.00 | 98.81 | 97.62 | 95.24 | 94.05 | 97.62 | 96.43 | 98.81 |
CFS | 50 | 98.81 | 98.81 | 96.43 | 94.05 | 95.24 | 97.62 | 97.62 | 98.81 |
ChiSquared | 50 | 97.62 | 97.62 | 97.62 | 95.24 | 95.24 | 98.81 | 97.62 | 98.81 |
All features | 1753 | 97.62 | 97.62 | 96.43 | 92.86 | 92.86 | 96.43 | 94.05 | 96.43 |
3. Colon (Alon et. al, 1999) | # Genes | SVM | RBF | MLP | Bayesian | J48 | ID3 | R. Forest | Bagging |
SVM-RFE | 50 | 100.00 | 97.78 | 97.78 | 97.78 | 95.56 | 91.11 | 95.56 | 95.56 |
CFS | 50 | 95.56 | 93.33 | 95.56 | 95.56 | 95.56 | 95.56 | 95.56 | 97.78 |
ChiSquared | 50 | 97.78 | 91.11 | 95.56 | 97.78 | 97.78 | 95.56 | 93.33 | 97.78 |
All features | 7464 | 95.56 | 91.11 | 91.11 | 93.33 | 91.11 | 80.00 | 88.89 | 93.33 |
4. Lung (Garber et. al, 2001) | # Genes | SVM | RBF | MLP | Bayesian | J48 | ID3 | R. Forest | Bagging |
SVM-RFE | 50 | 100.00 | 98.61 | 98.61 | 97.22 | 97.22 | 98.61 | 98.61 | 98.61 |
CFS | 50 | 97.22 | 97.22 | 98.61 | 98.61 | 97.22 | 97.22 | 97.22 | 97.22 |
ChiSquared | 50 | 98.61 | 98.61 | 98.61 | 97.22 | 95.83 | 97.22 | 97.22 | 97.22 |
All features | 917 | 97.22 | 97.22 | 97.22 | 95.83 | 94.44 | 95.83 | 97.22 | 97.22 |
5. Adenocarc. (Beer et.al, 2002) | # Genes | SVM | RBF | MLP | Bayesian | J48 | ID3 | R. Forest | Bagging |
SVM-RFE | 50 | 100.00 | 96.51 | 94.19 | 89.53 | 89.53 | 89.53 | 89.53 | 89.53 |
CFS | 50 | 98.84 | 97.67 | 93.02 | 89.53 | 89.53 | 89.53 | 89.53 | 89.53 |
ChiSquared | 50 | 98.84 | 95.35 | 91.86 | 88.37 | 90.70 | 88.37 | 94.19 | 88.37 |
All features | 5377 | 96.51 | 94.19 | 75.58 | 75.58 | 74.42 | 79.07 | 66.28 | 79.07 |
6. Lymphoma (Alizadeh et al, 2000) | # Genes | SVM | RBF | MLP | Bayesian | J48 | ID3 | R. Forest | Bagging |
SVM-RFE | 50 | 100.00 | 100.00 | 94.79 | 90.63 | 90.63 | 90.63 | 90.63 | 90.63 |
CFS | 50 | 97.92 | 94.79 | 93.75 | 90.63 | 90.63 | 90.63 | 90.63 | 90.63 |
ChiSquared | 50 | 97.92 | 95.83 | 92.71 | 89.58 | 91.67 | 89.58 | 94.79 | 89.58 |
All features | 4027 | 96.88 | 88.54 | 77.08 | 85.42 | 75.00 | 76.04 | 62.50 | 84.38 |
7. Melanoma (Bittner et. al, 2000) | # Genes | SVM | RBF | MLP | Bayesian | J48 | ID3 | R. Forest | Bagging |
SVM-RFE | 50 | 100.00 | 97.37 | 92.11 | 92.11 | 89.47 | 89.47 | 76.32 | 89.47 |
CFS | 50 | 97.37 | 86.84 | 89.47 | 89.47 | 92.11 | 92.11 | 76.32 | 86.84 |
ChiSquared | 50 | 97.37 | 89.47 | 86.84 | 86.84 | 89.47 | 89.47 | 86.84 | 86.84 |
All features | 8067 | 94.74 | 81.58 | 84.21 | 76.32 | 81.58 | 81.58 | 52.63 | 81.58 |
8. Ovarian (Welsh et. al, 2001) | # Genes | SVM | RBF | MLP | Bayesian | J48 | ID3 | R. Forest | Bagging |
SVM-RFE | 50 | 100.00 | 100.00 | 94.87 | 94.87 | 94.87 | 94.87 | 92.31 | 89.74 |
CFS | 50 | 97.44 | 87.18 | 92.31 | 94.87 | 94.87 | 94.87 | 89.74 | 92.31 |
ChiSquared | 50 | 97.44 | 89.74 | 92.31 | 94.87 | 94.87 | 94.87 | 87.18 | 94.87 |
All features | 7129 | 94.87 | 84.62 | 89.74 | 87.18 | 87.18 | 89.74 | 74.36 | 89.74 |