Figure 3
The refined phylogeny of haplogroup P1. The 12 novel completely sequenced haplogroup P1 mitogenomes from East Timor are shown together with the eight previously published. All differences are indicated (disregarding cytosine insertions after nps 309 and 16193) relative to the rCRS [50]. Haplogroups are according to [49], build 16. “P1e” is a novel suggestion. Bases are indicated according to the IUBMB nucleotide code. The prefix @ indicates the reversion of a mutation occurring earlier in the phylogeny. Underlined mutations are recurrent in the tree. For details and references, see Additional file 5.