Table 3 Hormone metabolism and signalling-related gene expression in tomato leaves as influenced by RL and DC3000 alone or in combination treatment

Auxin

Solyc01g110790

−4.72

2.23E-04

−2.34

2.20E-02

−3.56

6.28E-04

n.d.

n.d.

Auxin-induced SAUR-like protein

Solyc03g033590

−2.61

1.58E-03

−4.01

4.66E-04

−3.27

4.02E-04

−0.66

1.00E + 00

Auxin-induced SAUR-like protein

Solyc04g053010

−5.16

9.47E-04

−3.17

1.58E-02

−4.38

1.26E-03

n.d.

n.d.

Auxin-induced protein 6B

Solyc11g011670

−2.99

4.94E-02

−3.5

1.47E-01

−3.29

4.05E-02

n.d.

n.d.

Auxin-induced protein 6B

Solyc06g084070

−3.18

4.93E-02

−3.67

1.55E-01

−3.2

4.81E-02

n.d.

n.d.

Auxin responsive protein IAA2

Solyc06g008590

−4.57

5.07E-04

−2.04

6.10E-02

−5.93

3.48E-04

−1.36

1.00E + 00

Auxin responsive protein IAA10

Solyc02g092820

7.11

2.04E-18

0.48

1.00E + 00

5.34

1.48E-06

−1.77

9.03E-07

Indole-3-acetic acid-amido synthetase GH3-8

Salicylic acid

Solyc06g071030

−3.92

6.42E-04

0.24

1.00E + 00

−4.35

4.18E-04

−0.43

1.00E + 00

Isochorismate synthase

Solyc09g007910

2.85

0.00E + 00

−0.51

2.23E-04

2.18

1.59E-170

−0.67

6.95E-42

Phenylalanine ammonia-lyase

Solyc03g036480

6.34

3.62E-10

n.d.

n.d.

5.43

4.41E-06

−0.91

1.17E-01

Phenylalanine ammonia-lyase

Jasmonate

Solyc03g122340

6.3

1.73E-125

1.01

4.20E-01

5.82

4.45E-92

−0.48

2.08E-05

Lipoxygenase

Solyc08g014000

8.06

6.83E-22

−0.39

1.00E + 00

6.33

2.88E-08

−1.73

1.69E-08

Lipoxygenase

Solyc04g079730

7.22

1.42E-27

0.71

1.00E + 00

6.17

9.23E-15

−1.05

7.37E-05

Allene oxide synthase

Solyc09g089540

8.01

0.00E + 00

0.81

1.99E-01

8.61

0.00E + 00

0.6

5.56E-103

Proteinase inhibitor I

Solyc09g089500

8.59

0.00E + 00

1.19

3.96E-01

8.77

0.00E + 00

0.18

1.21E-03

Proteinase inhibitor I

Solyc09g084440

1.12

2.21E-02

−2.42

3.13E-02

0.48

2.70E-01

−0.64

5.25E-01

Proteinase inhibitor I

Solyc03g020060

9.14

0.00E + 00

0.51

9.43E-01

9.1

0.00E + 00

−0.04

6.54E-01

Proteinase inhibitor II

Solyc00g145170

9.9

1.62E-77

1.44

9.98E-01

9.8

1.07E-73

−0.11

7.35E-01

Proteinase inhibitor II

Solyc06g063390

−0.44

1.70E-01

−2.2

1.82E-05

−1.24

2.66E-03

−0.8

3.00E-01

Wound-induced basic protein

Solyc12g009220

8.27

2.95E-188

1.66

2.36E-01

9

9.73E-289

0.73

1.28E-31

Jasmonate ZIM-domain protein 1

Ethylene

Solyc08g081540

3.74

4.76E-04

−0.4

1.00E + 00

2.17

1.00E-01

−1.57

1.55E-01

1-aminocyclopropane-1-carboxylate synthase

Solyc12g005940

8.86

0.00E + 00

1.36

6.10E-02

9.17

0.00E + 00

0.32

1.24E-22

1-aminocyclopropane-1-carboxylate oxidase

Solyc09g065310

4.12

5.66E-03

n.d.

n.d.

n.d.

n.d.

−3.99

3.99E-02

Ethylene receptor 2

Solyc08g007230

5.25

1.86E-05

n.d.

n.d.

n.d.

n.d.

−1.96

3.09E-02

Ethylene responsive transcription factor 1a

Brassinosteroid

Solyc01g009810

5.36

2.00E-17

0.08

1.00E + 00

6.39

1.97E-34

1.03

1.27E-05

LRR receptor-like serine/threonine-protein kinase FEI 1

Solyc10g086500

4.15

1.52E-59

3.53

1.52E-37

3.66

1.08E-39

−0.49

3.19E-03

Steroid 5-alpha-reductase DET2

Solyc09g092520

−2.64

4.11E-15

−2.37

8.20E-14

−2.21

1.24E-12

0.43

8.66E-01

Brassinosteroid-regulated protein xyloglucan endotransglycosylase

Solyc02g086180

−4.14

7.44E-289

2.15

0.00E + 00

−4.21

9.70E-294

−0.07

1.00E + 00

Sterol C-5 desaturase

Solyc06g074090

−3.04

1.54E-08

2.27

2.37E-28

−3.57

1.10E-09

−0.53

1.00E + 00

Sterol reductase

Solyc04g074450

−2.8

1.91E-09

−3.28

8.89E-11

−2.79

1.84E-09

0.02

1.00E + 00

Phi-1 protein

Other hormone pathway

Solyc02g090890

−2.07

7.02E-03

3.16

3.59E-26

0.64

1.48E-01

2.71

8.83E-04

Zeaxanthin epoxidase chloroplastic

Solyc04g071960

−3.67

4.30E-05

1.36

9.83E-04

−3.79

3.29E-05

−0.12

1.00E + 00

Xanthoxin dehydrogenase

Solyc08g081370

1.49

2.67E-25

−0.65

8.60E-03

0.32

6.35E-02

−1.17

4.46E-16

RING-H2 finger protein

Solyc01g109170

3.28

1.21E-292

−1.16

6.63E-09

2.7

1.34E-164

−0.58

5.20E-22

Cold acclimation protein COR413-like

Solyc03g095780

2.35

1.23E-30

−1.13

1.15E-02

0.48

8.11E-02

−1.87

3.24E-21

Abscisic acid receptor PYL6

Solyc06g049050

−5.18

0.00E + 00

−1.45

0.00E + 00

−7.78

0.00E + 00

−2.6

1.07E-21

Expansin

Solyc01g090460

−2.66

1.95E-09

−1.89

2.72E-06

−4.2

2.55E-13

−1.54

3.56E-01

Homeobox-leucine zipper protein

Solyc12g056650

2.49

3.24E-01

7.91

9.16E-09

7.44

4.71E-07

4.95

4.15E-06

GIGANTEA2

Solyc04g050930

−4.03

1.49E-12

0.53

1.45E-01

−4.32

4.32E-13

−0.29

1.00E + 00

Violaxanthin de-epoxidase