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Table 3 Hormone metabolism and signalling-related gene expression in tomato leaves as influenced by RL and DC3000 alone or in combination treatment

From: RNA-seq analysis reveals the role of red light in resistance against Pseudomonas syringae pv. tomato DC3000 in tomato plants

Gene ID DC3000 RL RL + DC3000 (RL + DC3000) -DC3000 Description
  Log 2 FC q -value Log 2 FC q -value Log 2 FC q -value Log 2 FC q -value  
Auxin          
Solyc01g110790 −4.72 2.23E-04 −2.34 2.20E-02 −3.56 6.28E-04 n.d. n.d. Auxin-induced SAUR-like protein
Solyc03g033590 −2.61 1.58E-03 −4.01 4.66E-04 −3.27 4.02E-04 −0.66 1.00E + 00 Auxin-induced SAUR-like protein
Solyc04g053010 −5.16 9.47E-04 −3.17 1.58E-02 −4.38 1.26E-03 n.d. n.d. Auxin-induced protein 6B
Solyc11g011670 −2.99 4.94E-02 −3.5 1.47E-01 −3.29 4.05E-02 n.d. n.d. Auxin-induced protein 6B
Solyc06g084070 −3.18 4.93E-02 −3.67 1.55E-01 −3.2 4.81E-02 n.d. n.d. Auxin responsive protein IAA2
Solyc06g008590 −4.57 5.07E-04 −2.04 6.10E-02 −5.93 3.48E-04 −1.36 1.00E + 00 Auxin responsive protein IAA10
Solyc02g092820 7.11 2.04E-18 0.48 1.00E + 00 5.34 1.48E-06 −1.77 9.03E-07 Indole-3-acetic acid-amido synthetase GH3-8
Salicylic acid          
Solyc06g071030 −3.92 6.42E-04 0.24 1.00E + 00 −4.35 4.18E-04 −0.43 1.00E + 00 Isochorismate synthase
Solyc09g007910 2.85 0.00E + 00 −0.51 2.23E-04 2.18 1.59E-170 −0.67 6.95E-42 Phenylalanine ammonia-lyase
Solyc03g036480 6.34 3.62E-10 n.d. n.d. 5.43 4.41E-06 −0.91 1.17E-01 Phenylalanine ammonia-lyase
Jasmonate          
Solyc03g122340 6.3 1.73E-125 1.01 4.20E-01 5.82 4.45E-92 −0.48 2.08E-05 Lipoxygenase
Solyc08g014000 8.06 6.83E-22 −0.39 1.00E + 00 6.33 2.88E-08 −1.73 1.69E-08 Lipoxygenase
Solyc04g079730 7.22 1.42E-27 0.71 1.00E + 00 6.17 9.23E-15 −1.05 7.37E-05 Allene oxide synthase
Solyc09g089540 8.01 0.00E + 00 0.81 1.99E-01 8.61 0.00E + 00 0.6 5.56E-103 Proteinase inhibitor I
Solyc09g089500 8.59 0.00E + 00 1.19 3.96E-01 8.77 0.00E + 00 0.18 1.21E-03 Proteinase inhibitor I
Solyc09g084440 1.12 2.21E-02 −2.42 3.13E-02 0.48 2.70E-01 −0.64 5.25E-01 Proteinase inhibitor I
Solyc03g020060 9.14 0.00E + 00 0.51 9.43E-01 9.1 0.00E + 00 −0.04 6.54E-01 Proteinase inhibitor II
Solyc00g145170 9.9 1.62E-77 1.44 9.98E-01 9.8 1.07E-73 −0.11 7.35E-01 Proteinase inhibitor II
Solyc06g063390 −0.44 1.70E-01 −2.2 1.82E-05 −1.24 2.66E-03 −0.8 3.00E-01 Wound-induced basic protein
Solyc12g009220 8.27 2.95E-188 1.66 2.36E-01 9 9.73E-289 0.73 1.28E-31 Jasmonate ZIM-domain protein 1
Ethylene          
Solyc08g081540 3.74 4.76E-04 −0.4 1.00E + 00 2.17 1.00E-01 −1.57 1.55E-01 1-aminocyclopropane-1-carboxylate synthase
Solyc12g005940 8.86 0.00E + 00 1.36 6.10E-02 9.17 0.00E + 00 0.32 1.24E-22 1-aminocyclopropane-1-carboxylate oxidase
Solyc09g065310 4.12 5.66E-03 n.d. n.d. n.d. n.d. −3.99 3.99E-02 Ethylene receptor 2
Solyc08g007230 5.25 1.86E-05 n.d. n.d. n.d. n.d. −1.96 3.09E-02 Ethylene responsive transcription factor 1a
Brassinosteroid          
Solyc01g009810 5.36 2.00E-17 0.08 1.00E + 00 6.39 1.97E-34 1.03 1.27E-05 LRR receptor-like serine/threonine-protein kinase FEI 1
Solyc10g086500 4.15 1.52E-59 3.53 1.52E-37 3.66 1.08E-39 −0.49 3.19E-03 Steroid 5-alpha-reductase DET2
Solyc09g092520 −2.64 4.11E-15 −2.37 8.20E-14 −2.21 1.24E-12 0.43 8.66E-01 Brassinosteroid-regulated protein xyloglucan endotransglycosylase
Solyc02g086180 −4.14 7.44E-289 2.15 0.00E + 00 −4.21 9.70E-294 −0.07 1.00E + 00 Sterol C-5 desaturase
Solyc06g074090 −3.04 1.54E-08 2.27 2.37E-28 −3.57 1.10E-09 −0.53 1.00E + 00 Sterol reductase
Solyc04g074450 −2.8 1.91E-09 −3.28 8.89E-11 −2.79 1.84E-09 0.02 1.00E + 00 Phi-1 protein
Other hormone pathway          
Solyc02g090890 −2.07 7.02E-03 3.16 3.59E-26 0.64 1.48E-01 2.71 8.83E-04 Zeaxanthin epoxidase chloroplastic
Solyc04g071960 −3.67 4.30E-05 1.36 9.83E-04 −3.79 3.29E-05 −0.12 1.00E + 00 Xanthoxin dehydrogenase
Solyc08g081370 1.49 2.67E-25 −0.65 8.60E-03 0.32 6.35E-02 −1.17 4.46E-16 RING-H2 finger protein
Solyc01g109170 3.28 1.21E-292 −1.16 6.63E-09 2.7 1.34E-164 −0.58 5.20E-22 Cold acclimation protein COR413-like
Solyc03g095780 2.35 1.23E-30 −1.13 1.15E-02 0.48 8.11E-02 −1.87 3.24E-21 Abscisic acid receptor PYL6
Solyc06g049050 −5.18 0.00E + 00 −1.45 0.00E + 00 −7.78 0.00E + 00 −2.6 1.07E-21 Expansin
Solyc01g090460 −2.66 1.95E-09 −1.89 2.72E-06 −4.2 2.55E-13 −1.54 3.56E-01 Homeobox-leucine zipper protein
Solyc12g056650 2.49 3.24E-01 7.91 9.16E-09 7.44 4.71E-07 4.95 4.15E-06 GIGANTEA2
Solyc04g050930 −4.03 1.49E-12 0.53 1.45E-01 −4.32 4.32E-13 −0.29 1.00E + 00 Violaxanthin de-epoxidase
  1. Shown are the log2 fold-changes values (log2FC) and q-value (≤0.05) for genes expression by DC3000, RL, RL + DC3000, and (RL + DC3000)-DC3000 (comparison between RL + DC3000 and DC3000). The n.d. means not detectable.