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Table 3 Summary statistics for EST and de novo assembly

From: A de novo transcriptome of the noble scallop, Chlamys nobilis, focusing on mining transcripts for carotenoid-based coloration

  Total Brown Orange
NO. of raw reads 1,416,522 610,701 805,821
Average length (bp) 282 257 301
% reads removed 16.62 25.51 11.05
NO. of reads after cleaning 1,181,060 454,933 716,797
Average length of cleaned reads (bp) 308 297 310
NO. of reads assembled as isotigs 1,070,902 NA NA
NO. of isotigs 49,717 NA NA
Average length of isotigs 580 NA NA
Range of isotig lengths 50 - 7,102 bp NA NA
Isotigs above 200 bp 43,763 NA NA
NO. of singletons 110,158 NA NA
Average length of singletons 296 NA NA
Range of singletons lengths 50 - 654 bp NA NA
Singletons above 200 bp 80,501 NA NA
NO. of unique sequences a 159,875 NA NA
NO. of unique sequences (left after CD-hit) 111,670 NA NA
Unique sequences above 200 bases 87,120 NA NA
  1. aThe total number of isotigs and singletons.