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Table 5 Summary of simple sequence repeat (SSR) nucleotide classes among different nucleotide types found in C. nobilis sequences

From: A de novo transcriptome of the noble scallop, Chlamys nobilis, focusing on mining transcripts for carotenoid-based coloration

SSR type No. of SSR- containing ESTs NO. of SSRs % of total SSRs
Di-nucleotides 2,197 2,370 68.12
Tri-nucleotides 868 880 25.29
Tetra-nucleotides 202 202 5.81
Penta-nucleotides 18 18 0.52
Hexa-nucleotides 9 9 0.26
Total 3,294 3,479 100
  1. Note: Both isotigs and singletons sequences are used to predict the SSR loci.