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Table 3 Number, percentage, and relative abundance of SSRs in the different regions of the giant panda genome

From: Genome-wide survey and analysis of microsatellites in giant panda (Ailuropoda melanoleuca), with a focus on the applications of a novel microsatellite marker system

Regions   5′UTR CDS Intron 3′UTR Transposable elements Intergenic regions Total
Genome size(Mb)   0.58 33.05 652.3 2.55 865.57 745.46 2299.51
Percentage of the genome   0.03 1.44 28.37 0.11 37.64 32.42 100.00
Mono No. 39 110 145406 473 101984 200509 448521
  %a 0.01 0.02 32.42 0.11 22.74 44.70 100.00
  No./Mb 67 3 223 185 118 269 195
Di No. 10 22 64574 103 80910 101809 247428
  % 0.00 0.01 26.10 0.04 32.70 41.15 100.00
  No./Mb 17 1 99 40 93 137 108
Tri No. 47 969 9778 30 8048 19237 38109
  % 0.12 2.54 25.66 0.08 21.12 50.48 100.00
  No./Mb 81 29 15 12 9 26 17
Tatra No. 5 15 43271 35 48745 76573 168644
  % 0.00 0.01 25.66 0.02 28.90 45.41 100.00
  No./Mb 9 0 66 14 56 103 73
Penta No. 1 5 6589 10 3099 14287 23991
  % 0.00 0.02 27.46 0.04 12.92 59.55 100.00
  No./Mb 2 0 10 4 4 19 10
Hexa No. 1 45 629 2 688 1170 2535
  % 0.04 1.78 24.81 0.08 27.14 46.15 100.00
  No./Mb 2 1 1 1 1 2 1
All SSRs No. 103 1166 270247 653 243474 413585 929228
  % 0.01 0.13 29.08 0.07 26.20 44.51 100.00
  No./Mb 178 35 414 256 281 555 404
  1. %a = no./total no. of microsatellites in one kind of motifs.