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Table 2 Summary of the sequencing reads alignment to the reference genome

From: Transcriptomic analysis of hepatic responses to testosterone deficiency in miniature pigs fed a high-cholesterol diet

Statistics term

IM

CM

CMT

All reads

40578646

45391430

32329976

Unmapped reads

4949040

5702066

4154466

Mapped reads

35629606

39689364

28175510

Mapping rate

0.878

0.874

0.871

Unique mapping

32288705

36243263

25183689

Unique mapping rate

0.796

0.798

0.779

Repeat mapping

3340701

3445877

2991640