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Figure 1 | BMC Genomics

Figure 1

From: A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification

Figure 1

The read mapping summary for 16 tissue samples in the “transcriptome only” and “transcriptome+genome” mapping modes (note: read length=75 bp). In the “transcriptome only” mode, more reads are mapped in Ensembl than in RefGene and UCSC (left panel), and more reads become multiple-mapped in Ensembl than in RefGene and UCSC (right panel). Note: the gene model “none” means the RNA-Seq reads are mapped to the reference genome directly without the use of a gene model.

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