Table 1 The distribution of the ratio of read counts between RefGene and Ensembl annotations (read length = 75 bp)

Adipose

19.97

16.53

26.16

19.64

14.51

8.81

5.65

1.96

0.94

0.16

Adrenal

16.92

14.04

36.18

27.09

19.07

11.28

7.14

2.45

1.24

0.24

Brain

16.79

15.22

32.94

24.91

17.95

10.78

6.73

2.29

1.08

0.20

Breast

18.04

15.22

29.63

22.21

16.06

9.80

6.52

2.38

1.19

0.20

Colon

20.50

17.41

25.85

19.43

14.30

8.95

6.10

2.30

1.17

0.19

Heart

21.23

16.43

26.39

20.10

14.39

8.88

5.47

1.73

0.82

0.19

Kidney

18.86

16.08

28.88

21.50

15.51

9.55

6.40

2.55

1.30

0.26

Leukocyte

29.53

17.37

20.03

15.29

11.62

7.58

5.37

2.47

1.33

0.26

Liver

24.60

19.16

23.20

17.43

12.84

8.24

5.42

2.00

1.02

0.15

Lung

19.65

16.46

29.22

21.35

15.07

9.09

6.15

2.61

1.43

0.24

Lymph node

20.94

16.79

31.74

24.16

17.21

10.26

6.65

2.69

1.44

0.24

Ovary

16.90

13.42

31.46

23.30

16.72

10.23

6.63

2.31

1.13

0.20

Prostate

18.21

16.29

28.33

21.14

15.17

9.43

6.51

2.49

1.27

0.23

Skeletal muscle

29.60

23.48

18.65

14.40

10.73

6.88

4.81

2.34

1.39

0.21

Testis

10.15

13.35

31.35

22.57

15.84

9.35

5.92

2.08

1.05

0.28

Thyroid

17.41

14.25

30.08

22.23

15.88

9.39

5.88

1.97

1.03

0.24

Average

19.96

16.34

28.13

21.05

15.18

9.28

6.09

2.29

1.18

0.22