Visual depiction of NGS data of experimental hybrids using Chromosome VIII of Toxoplasma gondii. These plots were drawn similar to the simulated datasets by coloring hybrids according to their composition and inheritance from each parent (VAND-dark blue and ME49-yellow). The hybrid P1_29VBSF had no CCs but had three DCs. The hybrid P1_39VB had a CC and a DC. The hybrid P1_44VB had multiple CCs and a DC. The break points detected by individual algorithms were indicated next to the break points in color-coded different shapes respectively.