Skip to main content

Table 2 Specific transcription factor numbers in wheat identified at different developmental stages

From: Genome-wide characterization of developmental stage- and tissue-specific transcription factors in wheat

Family Dormant seed Germinating seed Reproductive Ripening Seedling Vegetative Sum of specific TF in each family Unclear
Alfin-like 2 0 2 0 1 1 6 2
AP2 0 0 2 0 0 1 3 0
ARF 0 0 1 0 0 0 1 0
ARR-B 0 0 0 0 0 0 0 0
B3 4 0 36 5 13 6 64 7
BBR-BPC 0 0 0 1 0 0 1 1
BES1 2 0 0 0 0 0 2 1
bHLH 4 0 22 5 29 15 75 20
BSD 0 0 1 1 1 0 3 2
bZIP 7 0 7 2 23 7 46 9
C2H2 0 0 11 2 4 4 21 8
C3H 2 0 13 5 6 5 31 1
CAMTA 0 0 0 0 2 0 2 1
CO-like 0 0 0 0 0 0 0 0
CPP 0 0 2 0 0 0 2 0
CSD 2 1 2 3 11 3 22 7
DBB 0 0 2 1 3 14 20 2
DBP 0 0 0 0 0 0 0 0
Dof 3 0 4 3 4 3 17 4
E2F/DP 1 0 1 0 1 0 3 0
EIL 1 0 2 0 2 2 7 0
ERF 8 0 26 17 35 44 130 25
FAR1 2 0 4 1 1 0 8 3
FHA 0 0 3 0 2 2 7 1
G2-like 1 0 3 0 7 0 11 6
GATA 2 0 3 0 1 1 7 2
GeBP 0 0 2 0 1 0 3 0
GRAS 4 0 15 10 19 2 50 6
GRF 0 0 1 0 0 0 1 1
HB-other 5 2 12 9 9 9 46 9
HSF 2 0 6 2 9 3 22 1
LBD(AS2/LOB) 2 0 4 3 6 3 18 4
LIM 2 0 4 1 6 2 15 2
LSD 0 0 0 0 3 0 3 1
MIKC 0 0 14 0 2 2 18 3
mTERF 5 0 20 11 8 3 47 13
M-type 3 0 9 5 11 2 30 3
MYB 2 0 18 8 15 24 67 14
MYB-related 8 0 8 6 32 9 63 12
NAC 1 0 16 15 33 40 105 16
NF-YA 1 0 1 0 0 1 3 1
NF-YB 1 0 6 3 2 3 15 3
NF-YC 3 2 7 5 10 17 44 10
Nin-like 1 0 1 0 4 0 6 0
OFP 3 0 2 1 5 2 13 2
PLATZ 1 0 1 3 2 3 10 1
RAV 0 0 0 0 2 1 3 1
S1Fa-like 0 0 1 2 4 0 7 1
SBP 0 0 6 0 1 0 7 3
sigma70-like 0 0 0 0 2 0 2 0
SRS 0 0 0 0 0 1 1 0
TALE 0 0 2 0 0 1 3 0
TAZ 2 0 1 0 3 0 6 0
TCP 0 0 2 0 0 1 3 0
Tify 0 0 12 1 10 13 36 4
Trihelix 3 0 4 3 3 2 15 1
TUB 0 1 1 1 9 2 14 3
ULT 0 0 0 0 0 0 0 0
VOZ 0 0 0 0 2 0 2 1
Whirly 1 0 0 0 2 0 3 2
WRKY 7 0 13 4 28 23 75 11
YABBY 0 0 2 2 0 0 4 1
ZF-HD 2 0 4 0 1 1 8 2
Sum of specific TFs at different stage 100 6 342 141 390 278 1257 234
Percentage of specific TFs at different stage 4.15% 0.25% 14.21% 5.86% 16.20% 11.55% 52.22% 9.72%
  1. Sum of specific TF in each family were the sum of TF numbers from dormant seed, germinating seed, reproductive, ripening, seedling and vegetative.
  2. Percentage of specific TFs at different stage was divided specific TF numbers at different stage by 2407.
\