Table 10 Conserved non-synonymous mutations in root-related genes among wild soybean varieties

1

Glyma06g46210 NEDD8-activating complex

48869473

A

A

C

Lysine to Asparagine

W09

48872310

C

C

T

Arginine to Cysteine

W05, W06, W08, W12, W13, W14, W16

48873032

C

C

G

Alanine to Glycine

W05, W08, W09, W12, W13, W14, W16, W17

48873041

C

C

A

Threonine to Asparagine

W05, W08, W09, W12, W13, W14, W16

48874136

A

A

G

Lysine to Arginine

W05, W06, W08, W09, W12, W13, W14, W16,W17

2

Glyma06g45510 G1/S-specific cyclin D

48234941

G

G

A

Aspartic Acid to Asparagine

All lines except W12

48235772

A

G

A

Methionine to Valine

W01, W10, W12, W17

48236876

C

C

A

Histidine to Asparagine

W01, W02, W03, W04, W05, W07, W08, W09, W11, W13, W15, W16, W17

3

Glyma06g45610 Leucine rich repeat

48346924

C

T

C

Glycine to Aspartic acid

W01, W02, W03, W04, W05, W06, W07, W08, W12, W13, W15, W16, W17

48353134

G

G

T

Threonine to Asparagine

W05, W09, W12, W11, W16

4

Glyma06g46490 TPR Transcription factor

49095540

G

A

G

Aspartic Acid to Asparagine

All except W07, W09 and W10

49095620

T

A

T

Serine to Arginine

W10

49095627

A

G

A

Asparagine to Aspartic Acid

W01, W03, W06, W08, W09

49095824

A

G

A

Threonine to Alanine

All except W10, W13, W17

49096075

A

G

A

Isoleucine to Methionine

All except W10

5

Glyma06g46730 C3HC4 type (RING finger)

49310698

T

T

C

Phenylalanine to Serine

W10, W13, W14, W16

49310719

C

C

T

Alanine to Valine

W09, W10, W12, W13, W14, W16, W17

49310842

G

G

A

Arginine to Glutamine

All except W07, W10, W09, W13, W14, W17

49311027

A

A

G

Isoleucine to Valine

All except W07, W09, W10, W12, W13, W14, W17

49311204

C

C

G

Glutamine to Glutamic Acid

W12, W13, W14, W16, W17