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Table 10 Conserved non-synonymous mutations in root-related genes among wild soybean varieties

From: Genetic variants in root architecture-related genes in a Glycine soja accession, a potential resource to improve cultivated soybean

S. No Gene ID/Annotation* SNP position W82 (Ref. genome) V71-370 PI407162 AA change Similar non-Synonymous SNPs in other wild soybeans +
1 Glyma06g46210 NEDD8-activating complex 48869473 A A C Lysine to Asparagine W09
48872310 C C T Arginine to Cysteine W05, W06, W08, W12, W13, W14, W16
48873032 C C G Alanine to Glycine W05, W08, W09, W12, W13, W14, W16, W17
48873041 C C A Threonine to Asparagine W05, W08, W09, W12, W13, W14, W16
48874136 A A G Lysine to Arginine W05, W06, W08, W09, W12, W13, W14, W16,W17
2 Glyma06g45510 G1/S-specific cyclin D 48234941 G G A Aspartic Acid to Asparagine All lines except W12
48235772 A G A Methionine to Valine W01, W10, W12, W17
48236876 C C A Histidine to Asparagine W01, W02, W03, W04, W05, W07, W08, W09, W11, W13, W15, W16, W17
3 Glyma06g45610 Leucine rich repeat 48346924 C T C Glycine to Aspartic acid W01, W02, W03, W04, W05, W06, W07, W08, W12, W13, W15, W16, W17
48353134 G G T Threonine to Asparagine W05, W09, W12, W11, W16
4 Glyma06g46490 TPR Transcription factor 49095540 G A G Aspartic Acid to Asparagine All except W07, W09 and W10
49095620 T A T Serine to Arginine W10
49095627 A G A Asparagine to Aspartic Acid W01, W03, W06, W08, W09
49095824 A G A Threonine to Alanine All except W10, W13, W17
49096075 A G A Isoleucine to Methionine All except W10
5 Glyma06g46730 C3HC4 type (RING finger) 49310698 T T C Phenylalanine to Serine W10, W13, W14, W16
49310719 C C T Alanine to Valine W09, W10, W12, W13, W14, W16, W17
49310842 G G A Arginine to Glutamine All except W07, W10, W09, W13, W14, W17
49311027 A A G Isoleucine to Valine All except W07, W09, W10, W12, W13, W14, W17
49311204 C C G Glutamine to Glutamic Acid W12, W13, W14, W16, W17
  1. +The wild soybean designations were derived from Lam et al. [35].