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Table 3 Mapped sequence read statistics

From: Virus genome dynamics under different propagation pressures: reconstruction of whole genome haplotypes of west nile viruses from NGS data

Strain

Isolate

Total trimmed read count

Matched read count

Mean read length

Fraction reference coverage

Average coverage level

WNV349/77

C3

1,625,850

628,670

90.99

1.00

4,125.35

 

D1

2,051,074

693,868

82.43

1.00

5,478.51

 

E1

1,618,204

963,103

84.36

1.00

6,923.01

 

F1

1,966,832

175,646

82.68

1.00

1,202.94

 

G2

1,923,216

371,000

82.71

1.00

2,543.41