Table 2 Whole-genome comparisons between predictions and current Sc. pombe and S. cerevisiae annotations
Nucleotide | Exon | Intron | Gene | |||||
|---|---|---|---|---|---|---|---|---|
Sn | Sp | Sn | Sp | Sn | Sp | Sn | Sp | |
Sc. pombe (all 5124 genes) | ||||||||
CodingQuarry | 98.6 | 98.9 | 90.3 | 89.4 | 92.6 | 95.2 | 87.5 | 83.0 |
AUGUSTUS | 98.0 | 99.3 | 89.0 | 90.6 | 94.2 | 92.7 | 83.1 | 87.7 |
TransDecoder | 93.4 | 99.2 | 80.8 | 85.4 | 85.3 | 96.6 | 76.3 | 72.5 |
S. cerevisiae (all 6575 genes) | ||||||||
CodingQuarry | 97.2 | 99.5 | 76.1 | 87.2 | 64.4 | 65.8 | 76.6 | 88.3 |
AUGUSTUS | 95.4 | 99.6 | 71.1 | 88.9 | 60.5 | 69.3 | 71.5 | 89.8 |
TransDecoder | 87.8 | 99.7 | 67.1 | 75.0 | 60.5 | 70.1 | 67.8 | 68.0 |