Figure 4From: Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their inactivation in fungal genomes Distribution of TE copies according to their dinucleotide mutation bias. Mutation rates were calculated using RIPCAL by comparing each TE copy with a Ti/Tvā>ā2 with the TE consensus sequence or the full-length genomic copy with the highest GC content through multiple-alignments. Y-axis: percentage relative to the total number of copies used in RIPCAL analysis. - Colored bars correspond to the percentage of copies with expected RIP* and dinucleotide preferentially used (>1/3) in CN-ā>āTN and (cNG -ā>ācNA) mutations. - Black bar: percentage of copies without expected RIP* (Ti/Tvā>ā2). - Gray bar: percentage of copies with expected RIP* but no evidence of dinucleotide bias. * RIP expected: Ti/Tvā>ā2. Note: more than one dinucleotide bias could be observed in a single TE copy.Back to article page