Divergences in gene repertoire among the reference Prevotella genomes derived from distinct body sites of human

Gupta, Vinod Kumar; Chaudhari, Narendrakumar M; Iskepalli, Suchismitha; Dutta, Chitra

doi:10.1186/s12864-015-1350-6

BMC Genomics

Table 1 Details of Prevotella strains used for this analysis

From: Divergences in gene repertoire among the reference Prevotella genomes derived from distinct body sites of human

Sr. No.	Name of organism	Niche	BioProject accession	SL	Size (Mb)	GC (%)	CDS Count	% Core genes	% Acc. genes	% Unique genes	N50 (Kb)	% Bacterial core genes out of 200
1	P. copri DSM 18205	GIT	PRJNA30025	S	3.51	46.3	3337	14	41	45	442.3	98
2	P. salivae DSM 15606	GIT	PRJNA53199	C	3.27	42.4	2939	16	62	22	3180.2	94.5
3	P. stercorea DSM 18206	GIT	PRJNA65131	S	3.10	50.5	3017	15	39	46	53.8	96.5
4	P. buccae ATCC 33574	Oral	PRJNA51491	S	3.28	52.2	2896	16	66	18	3266.2	94.5
5	P. buccae D17	Oral	PRJNA38737	S	3.36	52.4	2617	17	73	10	151.3	92.5
6	P. denticola F0289	Oral	PRJNA49293	F	2.94	51.9	2386	19	73	8	2937.6	94.5
7	P. marshii DSM 16973	Oral	PRJNA50531	S	2.56	48.5	2335	20	52	28	2544.6	98
8	P. melaninogenica ATCC 25845	Oral	PRJNA31383*	F	3.17	42.8	2296	20	73	7	1796.4	94.5
9	P. melaninogenica D18	Oral	PRJNA40045	S	3.29	42.7	2461	19	72	9	217.1	94.5
10	P. multiformis DSM 16608	Oral	PRJNA53055	S	3.06	52.9	2884	16	61	23	1620.3	94.5
11	P. nigrescens ATCC 33563	Oral	PRJNA64737	S	2.67	44	2421	19	63	18	2084	96.5
12	P. oris F0302	Oral	PRJNA38329	S	3.25	45	3316	14	61	25	432.3	96.5
13	P. oulorum F0390	Oral	PRJNA43117	S	2.81	47.8	2488	18	57	25	1512.2	98
14	P. pallens ATCC 700821	Oral	PRJNA64739	S	3.13	38.8	2860	16	61	23	2314.9	94.5
15	P. sp. oral taxon 299 str. F0039	Oral	PRJNA40047	S	2.45	38.7	1935	24	49	27	580.3	96.5
16	P. sp. oral taxon 306 str. F0472	Oral	PRJNA75153	S	2.95	42.7	2442	19	72	9	127.9	93.5
17	P. sp. oral taxon 317 str. F0108	Oral	PRJNA38521	S	4.10	49.1	2926	16	64	20	783.3	94.5
18	P. sp. oral taxon 472 str. F0295	Oral	PRJNA38731	S	3.64	48.2	3092	15	58	27	1184.5	96.5
19	P. tannerae ATCC 51259	Oral	PRJNA33153	S	2.59	47.5	2811	16	27	57	1429.3	94.5
20	P. veroralis F0319	Oral	PRJNA38331	S	2.99	43	3048	15	63	22	187	94.5
21	P. bergensis DSM 17361	Skin	PRJNA34637	S	3.27	48.9	2825	16	51	33	1075.7	94.5
22	P. amnii CRIS 21A-A	UGT	PRJNA40671	C	2.42	37.7	2023	23	62	15	88.5	95.5
23	P. bivia JCVIHMP010	UGT	PRJNA31377	C	2.42	41.1	2041	22	63	15	48.6	96
24	P. buccalis ATCC 35310	UGT	PRJNA40669	C	3.03	46.8	2456	19	61	20	74.5	95.5
25	P. denticola CRIS 18C-A	UGT	PRJNA61825	C	3.18	51.4	2701	17	74	9	97.1	94.5
26	P. disiens FB035-09AN	UGT	PRJNA51065	C	3.00	41.5	2621	17	63	20	128	96.5
27	P. oralis ATCC 33269	UGT	PRJNA51495	S	2.84	45.6	2488	18	53	29	2169.4	94.5
28	P. timonensis CRIS 5C-B1	UGT	PRJNA40667	C	2.80	43.6	2202	21	61	18	25.9	94.5

GIT- Gastrointestinal Tract, UGT- Urogenital Tract, *- Two Chromosomes, C- Contigs, S- Scaffolds, F- Finished, SL- Sequencing Level, % Acc Genes- % Accessory Genes.

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ISSN: 1471-2164

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