Table 4 Evaluations with RNA-Seq dataset at transcript level
From: GASS: genome structural annotation for Eukaryotes based on species similarity
Data source | # of annotated transcripts | # of mapped transcript | ||||
|---|---|---|---|---|---|---|
Ensembl-rheMac2 | GASS | RefSeq-rheMac3 | Ensembl-rheMac2 | GASS | RefSeq-rheMac3 | |
SRR299127 | 21,054 | 35,880 | 6,360 | 9,464(44.95%) | 16,429(45.79%) | 3,737(58.75%) |
SRR832953 | 17,793(84.51%) | 33,158(92.41%) | 5,752(90.44%) | |||
SRR594464 | 15,945(75.73%) | 28,733(80.08%) | 5.295(83.25%) | |||