Table 6 Evaluations with RNA-Seq dataset at splicing junction level
From: GASS: genome structural annotation for Eukaryotes based on species similarity
Data source | # of annotated junctions | # of mapped junction | ||||
|---|---|---|---|---|---|---|
Ensembl-rheMac2 | GASS | RefSeq -rheMac3 | Ensembl-rheMac2 | GASS | RefSeq-rheMac3 | |
SRR299127 | 103,757 | 117,577 | 39,230 | 3,600(3.47%) | 5,887(5.01%) | 2,226(5.67%) |
SRR832953 | 82,925(79.92%) | 91,386(77.72%) | 36,330(92.60%) | |||
SRR594464 | 59,384(57.23%) | 55,517(47.21%) | 29.988(76.44%) | |||