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Table 3 Distance analysis among phylogenic trees constructed based on maximum-likelihood and Bayesian MCMC methods

From: Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer

Phylogenetic analysis

vs CS

vs H37Rv

Unrooted

Rooted

Unrooted

Rooted

PhyML(aLRT)

2.88E-01

2.88E-01

5.95E-01

5.95E-01

PhyML(consel selected)

2.89E-01

2.89E-01

5.96E-01

5.96E-01

BEAST

1.68E + 03

1.20E + 03

2.61E + 03

1.91E + 03

  1. To quantify the branch score distance between trees, Robinson and Fould test [41] implemented in treedist in the Phylip package was utilized. Both of unrooted and rooted scores were calculated.
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BMC Genomics

ISSN: 1471-2164

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