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Table 1 Phage associated regions identified by PHAST

From: Comparative genomic analysis of a multiple antimicrobial resistant enterotoxigenic E. coli O157 lineage from Australian pigs

Strain Region Concatenated 1 Boundaries (bp) Size (kb) Ordered scaffold numbers PHAST Annotation Annotation Identity 2 (Phage Identity 3 ) PHAST Prediction 4
E. coli O157 SvETEC S1 1316571-1334538 17.9 83, 114, 2 Stx2 converting I NC_003525 24% (92%) Incomplete
  S2 2204749-2280987 76.2 59, 58, 107, 53, 39 mEp460 NC_019716 22% (90%) Intact
  S3 2966791-2982739 15.9 32, 81, 1 P1 NC_005856 50% (85.7%) Incomplete
  S4 3287635-3331585 43.9 1, 11 TL 2011b NC_019445 78.57% (98.2%) Intact
  S5 3449037-3477233 28.1 44, 70, 14 P1 NC_005856 39.39% (84.8%) Incomplete
  S6 4542510-4561835 19.3 31 APSE 2 NC_011551 15.78% (47.3%) Incomplete
E. coli O157:K88 734/3 K1 1322304-1357135 34.8 67, 55, 141, 6 lambda NC_001416 54.76% (97.6%) Intact
  K2 1555282-1584506 29.2 34, 83, 58 Fels 2 NC_010463 57.14% (100%) Incomplete
  K3 1810316-1849764 39.4 19, 41 mEp460 NC_019716 17.94% (92.3%) Intact
  K4 2254746-2314331 59.5 54, 65, 94, 98, 132, 136, 38 mEp460 NC_019716 29.11% (92.4%) Intact
  K5 3315282-3359241 43.9 2, 23 TL 2011b NC_019445 78.18% (98.1%) Intact
  K6 3476711-3497698 20.9 30 Fels 2 NC_010463 86.2% (100%) Intact
  K7 4558357-4577682 19.3 7 APSE 2 NC_011551 15% (45%) Incomplete
  1. 1Identified regions were generally over multiple scaffolds but were identified as concatenated sequence. 2Percent identity of the region compared to the PHAST annotation. 3Percentage of identified ORFs that encode phage or hypothetical genes. 4PHASTs prediction of whether each prophage encodes the genes necessary for lysogeny.