Table 1 Phage associated regions identified by PHAST
Strain | Region | Concatenated 1 Boundaries (bp) | Size (kb) | Ordered scaffold numbers | PHAST Annotation | Annotation Identity 2 (Phage Identity 3 ) | PHAST Prediction 4 |
|---|---|---|---|---|---|---|---|
E. coli O157 SvETEC | S1 | 1316571-1334538 | 17.9 | 83, 114, 2 | Stx2 converting I NC_003525 | 24% (92%) | Incomplete |
| Â | S2 | 2204749-2280987 | 76.2 | 59, 58, 107, 53, 39 | mEp460 NC_019716 | 22% (90%) | Intact |
| Â | S3 | 2966791-2982739 | 15.9 | 32, 81, 1 | P1 NC_005856 | 50% (85.7%) | Incomplete |
| Â | S4 | 3287635-3331585 | 43.9 | 1, 11 | TL 2011b NC_019445 | 78.57% (98.2%) | Intact |
| Â | S5 | 3449037-3477233 | 28.1 | 44, 70, 14 | P1 NC_005856 | 39.39% (84.8%) | Incomplete |
| Â | S6 | 4542510-4561835 | 19.3 | 31 | APSE 2 NC_011551 | 15.78% (47.3%) | Incomplete |
E. coli O157:K88 734/3 | K1 | 1322304-1357135 | 34.8 | 67, 55, 141, 6 | lambda NC_001416 | 54.76% (97.6%) | Intact |
| Â | K2 | 1555282-1584506 | 29.2 | 34, 83, 58 | Fels 2 NC_010463 | 57.14% (100%) | Incomplete |
| Â | K3 | 1810316-1849764 | 39.4 | 19, 41 | mEp460 NC_019716 | 17.94% (92.3%) | Intact |
| Â | K4 | 2254746-2314331 | 59.5 | 54, 65, 94, 98, 132, 136, 38 | mEp460 NC_019716 | 29.11% (92.4%) | Intact |
| Â | K5 | 3315282-3359241 | 43.9 | 2, 23 | TL 2011b NC_019445 | 78.18% (98.1%) | Intact |
| Â | K6 | 3476711-3497698 | 20.9 | 30 | Fels 2 NC_010463 | 86.2% (100%) | Intact |
| Â | K7 | 4558357-4577682 | 19.3 | 7 | APSE 2 NC_011551 | 15% (45%) | Incomplete |