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Table 2 The number of MAP isolates, herds, and whole genomes sequenced (WGS) within each VNTR type

From: Limitations of variable number of tandem repeat typing identified through whole genome sequencing of Mycobacterium avium subsp. paratuberculosis on a national and herd level

VNTR type

Locus

# isolates

# herds

# WGS

292

X3

25

47

3

7

10

32

INMV 2

3

2

3

3

2

2

2

8

398

139

83

INMV 3

3

2

3

3

2

2

1

8

41

25

16

INMV 1

4

2

3

3

2

2

2

8

36

16

13

INMV 17

3

1

3

3

2

2

2

8

18

3

3

INMV 68

2

2

5

3

2

2

2

8

17

6

1

INMV 13

2

2

3

3

2

2

2

8

6

2

1

INMV 6

3

2

3

3

2

1

2

8

4

4

2

INMV 77

3

2

2

3

2

2

2

8

3

2

2

INMV 7

3

2

3

3

2

1

1

8

1

1

1

INMV117

3

2

3

2

2

2

2

8

1

1

1

NEW1

3

3

3

3

2

2

1

8

1

1

1

NEW2

4

2

3

2

2

2

2

8

1

1

0

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BMC Genomics

ISSN: 1471-2164

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