Function Specific process | Chillpeach ID | Unigene annotation | Arab AGI | Arab gene symbol | Hormone signaling | Sugar signaling/ partioning | Hormone and secondary metabolite biosynthesis regulation | Cell wall and cytoesqueleton related | Cell polarity | |
---|---|---|---|---|---|---|---|---|---|---|
k-means 5. Correlated with tolerance at harvest and during cold storage | ||||||||||
Aminoacid metabolism | ||||||||||
 | Cyanide detoxification | PPN075E10 | Beta-cyanoalanine synthase 1 | AT3G61440 | CYSC1 |  |  |  |  |  |
 | Methionine metabolism | PPN034A06 | 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 | AT5G43850 | ARD4 |  |  | Yang Cycle | associated to VN tissue |  |
 |  | PPN034C12 | 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 | AT4G14710 | ARD2 |  |  | Yang Cycle | associated to VN tissue |  |
 |  | PPN072E05 | Cystathionine gamma synthase | AT3G01120 | MTO1/CGS1 |  |  |  |  |  |
Antioxidant system | ||||||||||
 | GLUTHATHIONE-GLUTAREDOXIN AND THIOREDOXIN REDOX HOMEOSTASIS | PPN039H11 | Glutathione S-transferase | AT5G17220 | TT19/GSTF12 |  |  | PA monomer transporter |  |  |
Cytoskeleton organization and biogenesis | ||||||||||
 | Actin microfilament-actin depolimerization | PPN047E05 | Actin depolymerizing factor 2 | AT5G59880 | ADF3 |  |  |  |  |  |
 | Microtubule-Microtubule binding and stabilization | PPN073D05 | Microtubule-associated proteins | AT5G55230 | MAP65-1 |  |  |  |  |  |
 | Microtubule-microtubule organization and formation | PPN075E12 | Tubulin folding cofactor B | AT3G10220 | EMB2804/ TFC |  |  |  |  |  |
RNA transcription regulation | ||||||||||
 | AP2/ EREBP family | PPN054F05 | AP2-related transcription factor | AT5G47220 | ERF2 | ET signaling |  |  | VN cell division |  |
 | AUX/IAA family | PPN014H03 | Auxin-induced protein AUX28 | AT1G04250 | AXR3/IAA17 | AUX and ABA nuclear signaling; negative regulator |  |  |  |  |
 |  | PPN057F01 | AUX/IAA protein | AT4G29080 | PAP2/IAA27 | AUX nuclear signaling; negative regulator |  |  |  |  |
 | LIM-family | PPN009B01 | Pollen-specific protein SF3, putative | AT1G10200 | WLIM1 |  |  |  |  |  |
 |  | PPN069C01 | Transcription factor lim1 | AT1G10200 | WLIM1 |  |  |  | Actin stabilizing protein |  |
 | MADS-box family | PP1006G03 | MADS-box transcription factor | AT5G60910 | FUL/ AGL8 |  |  | Positive regulatior of caroterne and anthocyanin biosynthesis, | Negative regulation of lignin |  |
 |  | PPN042H02 | MADS4 | AT4G18960 | AG | ET up-regulation |  | Postisitive carotene biosynthesis regulation; | Negative regulation of lignin biosynthesis |  |
RNA translation and protein assembly | ||||||||||
 | Regulation of protein biosynthesis | PPN006H04 | Translationally-controlled tumor protein homolog | AT3G16640 | TCTP | AUX cytoplasmic signaling | Sugar signaling |  | CW biosynthesis regulation |  |
Secondary metabolism | ||||||||||
 | Anthocyanin metabolism | PpLDOX (PpLDOX) | Leucoanthocyanidin dioxygenase |  | PpLDOX |  |  | Flavonoid/PA biosynthesis |  |  |
 |  | PPN055C03 | Anthocyanidin reductase | AT1G61720 | BAN |  |  | PA biosynthess |  |  |
 | Aspartate biosyntheis | PPN046D06 | 1-aminocyclopropane-1-carboxylate synthase | AT1G62960 | ACS10 |  |  |  |  |  |
 | Carotenoid metabolism | PPN006A10 | Phytoene synthase | AT5G17230 | PSY |  |  |  |  |  |
 |  | PPN067A01 | Capsanthin/ capsorubin synthase | AT3G10230 | LYC |  |  |  |  |  |
 | Cyanide detoxification | PP1000E01 | Cyanate hydratase | AT3G23490 | CYN |  |  |  |  |  |
 |  | PPN066B01 | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein | AT5G12040 |  |  |  |  |  |  |
 | Flavonoid metabolism | PPN050G05 | Dihydroflavonol 4-reductase-like | AT5G58490 |  |  |  | Flavonoid/PA biosynthesis |  |  |
 |  | PPN052H09 | Chalcone synthase 2 | AT5G13930 | CHS/TT4 | Negative regulation of AUX transport |  |  |  |  |
Signal transduction pathway | ||||||||||
 | Cytoplasmic TOR signaling | PPN076G10 | Protein lethal with sec thirteen 8-2 | AT3G18140 | LST8-1 | AUX cytoplasmic signaling | Sugar signaling |  | CW biosynthesis regulation |  |
 | ET signaling/ ET signal transduction | PPN011G11 | GTP-binding protein | AT3G46060 | ARA3/RAB8A | ET signaling |  |  |  |  |
Trafficking machinery and membrane dynamics | ||||||||||
 | CME;EE;internalization and intracellular trafficking of PM proteins | PPN011F03 | Clathrin_L-chain | AT2G40060 | CLC2 | Regulates cellular AUX levels by controlling the abundance and distribution of PIN proteins at the PM |  |  |  | Cell polarity regulation |
 | CME;internalization and intracellular trafficking of PM proteins | PPN017G03 | Calcium-binding EF-hand | AT3G01780 | TPLATE | Regulates cellular AUX levels by controlling the abundance and distribution of PIN proteins at the PM |  |  | Regulation of cellulose synthesis by controlling the abundance of active CESA complexes at the PM | Cell polarity regulation |
 | Endosomal sorting complex | PPN060A04 | Putative endosomal Vps protein complex subunit | AT5G22950 | VPS24.1 | Required for internalize PIN1, PIN2, and AUX1 to the MVB/ LE for vacuolar degradation |  |  |  |  |
 | Golgy to ER/ COPI vesicles | PPN044E10 | ARF-like small GTPase 1 | AT2G47170 | ARF1A1C/BEX1 | Essential for recycling of PIN transporters to the PM and for vacuolar targeting |  |  |  | Cell polarity |
 | Retromer complex;LE to vacuole | PPN007G03 | Sorting nexin-like protein | AT5G06140 | SNX1 | Regulates both the recycling VSR from the TGN/ EE to the ER and the balance between vacuolar degradation and recycling of PIN proteins |  |  |  |  |
 |  | PPN023B01 | Ras-related protein Rab7 | AT3G18820 | RABG3F/RAB7B |  |  |  |  |  |
k-means 8. Associated with high tolerance to chilling injury | ||||||||||
Aminoacid metabolism | ||||||||||
 | AUX biosynthesis | PPN058D11 | Anthranilate synthase beta subunit | AT1G25220 | ASB1 | AUX biosynthesis |  |  |  |  |
RNA transcription regulation | ||||||||||
 | AUX/ IAA family | PP1009D02 | IAA16 protein | AT1G04250 | AXR3/IAA17 | AUX and ABA nuclear signaling; negative regulator |  |  |  |  |
 |  | PPN060G07 | AUX/IAA protein | AT1G04240 | IAA3/SHY2 | AUX nuclear signaling; negative regulator |  |  |  |  |
 | HD-ZIP family | PPN074H05 | HB2 homeodomain protein | AT4G35550 | HB-4/WOX13 | AUX regulated |  |  | SCW biosynthesis; negative regulator lignin biosynthesis |  |
 | MYB-family | PPN067A04 | MYB-like DNA-binding domain protein | AT4G38620 | MYB4 |  |  |  | SCW biosynthesis; negative regulator lignin biosynthesis |  |
Signal transduction pathway | ||||||||||
 | ET signaling/ ET receptor | PPN054G06 | Ethylene receptor | AT3G04580 | EIN4 | ET signaling |  |  |  |  |
Transport | ||||||||||
 | Cooper transport | PPN035H02 | Copper-transporting ATPase RAN1 | AT5G44790 | RAN1 | ET signaling; delivers cooper ion into the ET receptors; is required for both ET binding and the receptor functionality |  |  |  |  |