Table 5 Genes discussed in the text correlated with sensitivity at harvest and during cold storage (cluster k-means 9)

Microtubule stability and organization

PPN077E06

Microtubule-associated protein

AT3G04630

WDL1

Negative regulator of microtubule structure and stability

Ubiquitin ligase E3 complex/ SFC-culin

PPN032H05

Cullin

AT4G02570

AXR6/CUL1

AUX nuclear signaling

MYB-family

PPN055C11

Sucrose responsive element binding protein

AT5G67300

MYBR1/MYB44

ABA, AUX, ET

Sucrose responsive element binding protein

G-protein coupled receptor protein signaling pathway/ G-protein complex

PPN065B10

Guanine nucleotide binding protein (G-protein), alpha subunit family protein

AT1G31930

XLG3

ABA, AUX, ET

Sugar sensitivity

Phosphorylation cascades/ MAPK

PP1009F07

Trichoderma-induced protein kinase

AT3G45640

MPK3

Positive regulation of ACS type I

Ethylene biosynthesis; positive regulation of ACS type I

Pectin induced

Phosphorylation cascades/ MAPKKK

PPN071C11

protein kinase family protein/ankyrin repeat family protein

AT1G14000

VIK

AUX and BR signaling

Sugar partioning and homeostasis

VN formation

Phosphorylation cascades/ PP2A

PPN014G07

Serine/threonine-protein phosphatase 2A regulatory subunit A beta isoform

AT3G25800

PDF1/PP2AA2

Regulates PIN subcellular distribution

Cell polarity regulation

CME;Vesicle coat/ clathrin coated vesicles

PP1003H08

Putative Clathrin coat assembly protein AP50

AT5G46630

AP2M

Regulates cellular AUX levels by controlling the abundance and distribution of PIN proteins at the PM

Regulates cellulose synthesis controlling the abundance and distribution of active CESA complexes at the PM

Cell polarity regulation

Fatty acid biosyntheis

PPN026B01

Carboxyl transferase alpha subunit

AT2G38040

CAC3

Fatty acid biosynthesis

Glycerolipid biosynthesis

PPN008G03

Digalactosyldiacylglycerol synthase 1

AT3G11670

DGD1

Digalactosyl diacylglycerol biosynthesis

Polar targeting of proteins to the PM; Lipid microdomains

Glycerolipid metabolism

PPN065F12

phosphatidic acid phosphatase-related/PAP2-related

AT3G50920

LPPEPSILON1

Diacylglycerol biosynthesis

Phospholipid biosynthesis

PPN008H07

Putative phospholipid cytidylyltransferase

AT2G38670

PECT1

Phosphoethanolamine biosynthesis

Polar targeting of proteins to the PM;Lipid microdomains

Trans-Golgi network transport vesicle/ COPI vesicles

PPN002C04

ARF GTPase-activating domain-containing protein

AT5G13300

VAN3/SFC

required for either normal PIN1 cycling or for PID-directed efflux machinery relocation

Regulates formation of plant VN

Cell polarity regulation

Carbohydrate transport

PP1003F09

Integral membrane protein,

AT1G75220

ERDL6

Sugar partioning and homeostasis

Cl-channel

PPN078A03

Cl-channel, voltage gated; IMP dehydrogenase related 1

AT5G33280

CLCG

Na/ K antiporter

PPN064A01

Na+/ H+ antiporter

AT2G01980

SOS1

Nitrate transport

PPN024D02

Nitrate transporter NRT1-2

AT1G18880

NRT1.9

Oligopepetide transport

PPN005F03

Oligopeptide transporter 7

AT4G10770

OPT7

PPN064F08

POT family, putative

AT1G59740

NRT1/NPF4.3

Unknown transporter

PPN066F09

Putative integral membrane protein

AT5G19980

GONST4

Sugar partioning and homeostasis

Is probably involved in the provision of GDP- sugars into the Golgi for CW polysaccharide synthesis such as RG-II and XyG

Unknown interferon protein

PPN065A05

Interferon-related developmental regulator family protein

AT1G27760

SAT32

ABA

Unkown Zinc finger RING-like

PP1003D02

Ubiquitin ligase

AT3G23280

XBAT35

ET regulation ABA, AUX

Glucose