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Table 2 Gene sets identified by the k-means clustering analysis

From: Transcriptome analysis of cattle muscle identifies potential markers for skeletal muscle growth rate and major cell types

Gene set Enriched GO term 1 Cluster numbers 5 gene set Possible biological process
k = 13 k = 10 k = 13 k = 10
All 2 All PN 3 PN
IMF4 N/A N/A N/A N/A N/A ACSM1, CIDEA, DGAT2, FABP4, THRSP IMF deposition
ECM5 ECM organization N/A N/A N/A N/A ADAMTS4, BGN, COL5A2, TGFB2, SERPINH1 General ECM remodelling
Cell cycle Cell cycle process C9 C3 C9 C5 CDC6, CDC20, CDCA3, KIF20A, KIF23 General mitotic cell division
ECM1 ECM organization C9 C3 C9 C5 COL5A2, COL1A2, SDC3, SH3PXD2B, TNC General ECM remodelling
ECM2 ECM organization C8 C10 C10 N/A COL3A1, GFOD2, LAMA4, MMP15, TGFB3 ECM remodelling involved in angiogenesis
Angiogenesis Angiogenesis C8 C10 C10 C5 CCBE1, ELK3, NOTCH1, SOX18, VASH1 Angiogenesis
Locomotion Regulation of locomotion C10 C9 C1 C1 ADORA3, ENG, FLT4, IFITM2, LMNA Cell migration involved in the newly formed blood vessel
  1. 1the source of the corresponding gene set.
  2. 2all developmental stages.
  3. 3postnatal developmental stages.
  4. 4this gene set was generated by our previous work [12].
  5. 5this gene set was generated from the correlation-based analysis.