Skip to main content

Table 8 SWER, MEC and runtimes of SDhaP for simulated hexaploid data

From: SDhaP: haplotype assembly for diploids and polyploids via semi-definite programming

Dataset parameters

Genotyping error rate

SDhaP

  

MEC

SWER

t(in secs)

length 103, cov 30

0.0480

1270

0.1338

278

length 103, cov 60

0.0283

1653

0.0215

943

length 103, cov 120

0.0177

2246

0.0170

1178

length 103, cov 180

0.0087

1767

0.0017

8341

length 104, cov 30

0.0480

14127

0.3370

1665

length 104, cov 60

0.0283

16014

0.1100

5240

length 104, cov 120

0.0177

21102

0.0353

19940

length 104, cov 180

0.0087

72203

0.0210

30911

  1. MEC, SWER and running times of SDhaP for biallelic hexaploid simulated data. HapTree completed the task within 48 hrs in only one case, (l = 30, cov=60), where it achieved MEC=2832, SWER=0.1114, and t = 3441 s, all inferior compared to the results of SDhaP in the table.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us