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Table 8 SWER, MEC and runtimes of SDhaP for simulated hexaploid data

From: SDhaP: haplotype assembly for diploids and polyploids via semi-definite programming

Dataset parameters Genotyping error rate SDhaP
   MEC SWER t(in secs)
length 103, cov 30 0.0480 1270 0.1338 278
length 103, cov 60 0.0283 1653 0.0215 943
length 103, cov 120 0.0177 2246 0.0170 1178
length 103, cov 180 0.0087 1767 0.0017 8341
length 104, cov 30 0.0480 14127 0.3370 1665
length 104, cov 60 0.0283 16014 0.1100 5240
length 104, cov 120 0.0177 21102 0.0353 19940
length 104, cov 180 0.0087 72203 0.0210 30911
  1. MEC, SWER and running times of SDhaP for biallelic hexaploid simulated data. HapTree completed the task within 48 hrs in only one case, (l = 30, cov=60), where it achieved MEC=2832, SWER=0.1114, and t = 3441 s, all inferior compared to the results of SDhaP in the table.