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Table 2 Summary of de novo assembly

From: Identification of hydroxy fatty acid and triacylglycerol metabolism-related genes in lesquerella through seed transcriptome analysis

 

Isogroups

Isotigs

Singletons ┼

Number

26,995

38,002

21,912

Average contig count

1.7

2.132

 

Largest contig count

2,257

16

 

Number with one contig

22,649

22,994

 

Average isotig count

1.4

  

Largest isotig count

97

  

Number with one isotig

22,698

  

Number of bases (nt)

 

37,527,552

 

Average isotig size (bp)

 

987.515

 

N50# isotig size (bp)

 

1,310

 

Largest isotig size (bp)

 

11,074

 
  1. ┼The number of valid singleton after SeqClean and Lucy.
  2. #The half size of all bases reside in isotigs.
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BMC Genomics

ISSN: 1471-2164

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