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Table 1 Description of the sequenced Alternaria genomes

From: The Alternaria genomes database: a comprehensive resource for a fungal genus comprised of saprophytes, plant pathogens, and allergenic species

Species name Strain codes Additional information Sequencing technologies Genome sequence size (Mb) Contigs/super-contigs Contigs/super-contigs N50(kb) Predicted genes (#)
A. alternata ATCC 66891, EGS 34–016, BMP 0269 Allergic diseases of human, leaf spot, rots of plants 454 33.2 499 300 11635
A. alternata ATCC 11680, BMP 0238, IHEM 4706 Allergic diseases of human, leaf spot, rots of plants (possibly A. tenuissima) 454 33.8 797 450 12323
A. brassicicola ATCC 96836, EGS 42–002, BMP 1950 Blackspot of brassica Sanger 29.6 4039/838 18/ 2400 10514
A. alternata ATCC 66982, EGS 34–039, BMP 0270 Allergic disease of human, leaf spot, rots of plants Illumina 33.5 393 757 12290
A. arborescens ATCC 204491, EGS 39–128, BMP 0308 Stem canker of tomato Illumina 34.0 1332 624 14741
A. citriarbusti EGS 46–140, BMP 2343, SH-MIL-8 s Brown/black spot of citrus Illumina 34.1 2273 48 12606
A. destruens ATCC 204363, EGS 46–069, BMP 0317 Infecting and suppressing dodder (weed) Illumina 41.8 31070 3 14814
A. fragariae BMP 3062, NAF-8 Black spot disease of strawberry Illumina 33.2 1027 78 12272
A. gaisen EGS 90–0512, BMP 2338 Black spot, ring spot disease of pear Illumina 34.6 7485 10 13902
A. tangelonis EGS 45–080, BMP 2327, BC2-RLR-1 s Leaf spot of citrus Illumina 34.0 2459 37 12639
A. longipes EGS 30–033, BMP 0313 Black/brown leaf spot of tobacco Illumina 36.3 3412 137 13219
A. mali BMP 3064, IFO8984 Leaf ring spot of apple Illumina 34.7 2682 35 12715
A. mali BMP 3063, M-71 Leaf ring spot of apple Illumina 34.1 4439 21 12727
A. turkisafria BMP 3436, SH-MIL-20s Leaf spot of citrus Illumina 34.0 2347 33 12739
A. tenuissima ATCC 96828, EGS 34–015, BMP 0304 Leaf spot of plants Illumina 33.5 676 662 12276
A. limoniasperae EGS 44–159, BMP 2335 Leaf spot of citrus Illumina 35.1 2796 50 12966
A. carthami BMP 1963, CBS 635.80 Leaf spot and blight of safflower Illumina 34.5 9340 72 12071
A. capsici ATCC MYA-998, EGS 45–075, BMP 0180 Leaf spot of solanaceae (pepper) Illumina 34.0 13743 31 11487
A. crassa BMP 0172, ACR1 Leaf spot of solanaceae Illumina 35.0 12126 54 11663
A. dauci ATCC 36613, BMP 0167 Leaf blight of carrots Illumina 32.1 12030 13 11981
A. macrospora BMP 1949, CH3 Leaf spot of cotton Illumina 31.7 3153 37 11961
A. porri BMP 0178, Z6B Purple blotch, leaf blight and bulb rot of Allium (onion) Illumina 31.2 16767 9 12232
A. solani BMP 0185 Early blight of potatoes and tomatoes Illumina 32.9 5613 144 11726
A. tagetica EGS 44–044, BMP 0179 Leaf spot of marigold Illumina 35.1 16372 72 11999
A. tomatophila BMP 2032, CBS 109156 Leaf spot of tomato Illumina 34.1 10185 22 12601