Table 1 Description of the sequenced Alternaria genomes
Species name | Strain codes | Additional information | Sequencing technologies | Genome sequence size (Mb) | Contigs/super-contigs | Contigs/super-contigs N50(kb) | Predicted genes (#) |
|---|---|---|---|---|---|---|---|
A. alternata | ATCC 66891, EGS 34–016, BMP 0269 | Allergic diseases of human, leaf spot, rots of plants | 454 | 33.2 | 499 | 300 | 11635 |
A. alternata | ATCC 11680, BMP 0238, IHEM 4706 | Allergic diseases of human, leaf spot, rots of plants (possibly A. tenuissima) | 454 | 33.8 | 797 | 450 | 12323 |
A. brassicicola | ATCC 96836, EGS 42–002, BMP 1950 | Blackspot of brassica | Sanger | 29.6 | 4039/838 | 18/ 2400 | 10514 |
A. alternata | ATCC 66982, EGS 34–039, BMP 0270 | Allergic disease of human, leaf spot, rots of plants | Illumina | 33.5 | 393 | 757 | 12290 |
A. arborescens | ATCC 204491, EGS 39–128, BMP 0308 | Stem canker of tomato | Illumina | 34.0 | 1332 | 624 | 14741 |
A. citriarbusti | EGS 46–140, BMP 2343, SH-MIL-8 s | Brown/black spot of citrus | Illumina | 34.1 | 2273 | 48 | 12606 |
A. destruens | ATCC 204363, EGS 46–069, BMP 0317 | Infecting and suppressing dodder (weed) | Illumina | 41.8 | 31070 | 3 | 14814 |
A. fragariae | BMP 3062, NAF-8 | Black spot disease of strawberry | Illumina | 33.2 | 1027 | 78 | 12272 |
A. gaisen | EGS 90–0512, BMP 2338 | Black spot, ring spot disease of pear | Illumina | 34.6 | 7485 | 10 | 13902 |
A. tangelonis | EGS 45–080, BMP 2327, BC2-RLR-1 s | Leaf spot of citrus | Illumina | 34.0 | 2459 | 37 | 12639 |
A. longipes | EGS 30–033, BMP 0313 | Black/brown leaf spot of tobacco | Illumina | 36.3 | 3412 | 137 | 13219 |
A. mali | BMP 3064, IFO8984 | Leaf ring spot of apple | Illumina | 34.7 | 2682 | 35 | 12715 |
A. mali | BMP 3063, M-71 | Leaf ring spot of apple | Illumina | 34.1 | 4439 | 21 | 12727 |
A. turkisafria | BMP 3436, SH-MIL-20s | Leaf spot of citrus | Illumina | 34.0 | 2347 | 33 | 12739 |
A. tenuissima | ATCC 96828, EGS 34–015, BMP 0304 | Leaf spot of plants | Illumina | 33.5 | 676 | 662 | 12276 |
A. limoniasperae | EGS 44–159, BMP 2335 | Leaf spot of citrus | Illumina | 35.1 | 2796 | 50 | 12966 |
A. carthami | BMP 1963, CBS 635.80 | Leaf spot and blight of safflower | Illumina | 34.5 | 9340 | 72 | 12071 |
A. capsici | ATCC MYA-998, EGS 45–075, BMP 0180 | Leaf spot of solanaceae (pepper) | Illumina | 34.0 | 13743 | 31 | 11487 |
A. crassa | BMP 0172, ACR1 | Leaf spot of solanaceae | Illumina | 35.0 | 12126 | 54 | 11663 |
A. dauci | ATCC 36613, BMP 0167 | Leaf blight of carrots | Illumina | 32.1 | 12030 | 13 | 11981 |
A. macrospora | BMP 1949, CH3 | Leaf spot of cotton | Illumina | 31.7 | 3153 | 37 | 11961 |
A. porri | BMP 0178, Z6B | Purple blotch, leaf blight and bulb rot of Allium (onion) | Illumina | 31.2 | 16767 | 9 | 12232 |
A. solani | BMP 0185 | Early blight of potatoes and tomatoes | Illumina | 32.9 | 5613 | 144 | 11726 |
A. tagetica | EGS 44–044, BMP 0179 | Leaf spot of marigold | Illumina | 35.1 | 16372 | 72 | 11999 |
A. tomatophila | BMP 2032, CBS 109156 | Leaf spot of tomato | Illumina | 34.1 | 10185 | 22 | 12601 |