Skip to main content

Advertisement

Table 1 Overview of the Pediococcus damnosus LMG 28219 draft genome and the best BLAST hits

From: Comparative genome analysis of Pediococcus damnosus LMG 28219, a strain well-adapted to the beer environment

Draft genome of P. damnosus LMG 28219 Mean GC content (%) Mean size consensus (bp) Best BLAST hit
82, 98, 145, 116, 77, 119, 47, 53, 5, 89, 56, 76, 166, 84, 81, 136, 102, 141, 72, 30, 52, 129, 74, 54, 19, 110, 147, 49, 26, 85, 137, 61, 146, 177, 7, 68, 131, 104, 87, 32, 17, 80, 66, 165, 2, 20, 101, 96, 4, 59, 45, 164, 118, 64, 176, 69, 90, 24, 127, 10, 46, 139, 114, 60, 124, 23, 83, 51, 151, 169, 106, 11, 121, 78, 55, 43, 130, 48, 65, 168, 27, 62, 60, 79, 6, 152, 120, 73, 35, 99, 29, 71* 38.3 20814 chromosomal DNA (NC_016605) P. claussenii ATCC BAA-344 T
21, 39, 41, 183 36.9 4040 pPECL-3 (NC_016636)
12, 21, 94, 95, 112, 135 38.5 3419 pPECL-4 (NC_016607)
1,21, 39, 40, 95, 97, 107, 132, 135, 170 38.6 5198 pPECL-5 (NC_016608)
21, 107, 135, 178 37.0 4924 pPECL-6 (NC_017017)
8,21, 39, 41, 86, 94, 182, 183 38.1 3926 pPECL-7 (NC_017018)
70,14, 97* 42.5 9516 pPECL-8 (NC_017019)
16, 57 49.0 2538 Bacillus megaterium QM B1551 (pBM400, NC_004604) and WSH-002 (WSH-002_p1, CP003018) Other
123, 134, 140 37.2 4034 L. brevis 925A (pLB925A04, NC_012551), KB290 (pKB290-4, AP012171), and ATCC 367 (plasmid 1, NC_008498)
37 44.6 1242 L. plantarum WCFS1 (pWCFS103, NC_006377)
100, 122 33.9 5879 L. buchneri CD034 (pCD034-3, CP003044) and NRRL B-30929 (pLBUC01, NC_015420)
18, 22, 93, 108, 109, 113, 115, 143, 158, 162, 163 40.6 2797 Several Lactobacillus spp.
  1. Contigs with the highest hit scores are highlighted in bold. *Contig numbers are mentioned in ordered fashion. p: plasmid, L.: Lactobacillus, P.: Pediococcus, T: type strain, bp: base pairs.