Table 1 Overview of the Pediococcus damnosus LMG 28219 draft genome and the best BLAST hits
Draft genome of P. damnosus LMG 28219 | Mean GC content (%) | Mean size consensus (bp) | Best BLAST hit | |
|---|---|---|---|---|
82, 98, 145, 116, 77, 119, 47, 53, 5, 89, 56, 76, 166, 84, 81, 136, 102, 141, 72, 30, 52, 129, 74, 54, 19, 110, 147, 49, 26, 85, 137, 61, 146, 177, 7, 68, 131, 104, 87, 32, 17, 80, 66, 165, 2, 20, 101, 96, 4, 59, 45, 164, 118, 64, 176, 69, 90, 24, 127, 10, 46, 139, 114, 60, 124, 23, 83, 51, 151, 169, 106, 11, 121, 78, 55, 43, 130, 48, 65, 168, 27, 62, 60, 79, 6, 152, 120, 73, 35, 99, 29, 71* | 38.3 | 20814 | chromosomal DNA (NC_016605) | P. claussenii ATCC BAA-344 T |
21, 39, 41, 183 | 36.9 | 4040 | pPECL-3 (NC_016636) | |
12, 21, 94, 95, 112, 135 | 38.5 | 3419 | pPECL-4 (NC_016607) | |
1,21, 39, 40, 95, 97, 107, 132, 135, 170 | 38.6 | 5198 | pPECL-5 (NC_016608) | |
21, 107, 135, 178 | 37.0 | 4924 | pPECL-6 (NC_017017) | |
8,21, 39, 41, 86, 94, 182, 183 | 38.1 | 3926 | pPECL-7 (NC_017018) | |
70,14, 97* | 42.5 | 9516 | pPECL-8 (NC_017019) | |
16, 57 | 49.0 | 2538 | Bacillus megaterium QM B1551 (pBM400, NC_004604) and WSH-002 (WSH-002_p1, CP003018) | Other |
123, 134, 140 | 37.2 | 4034 | L. brevis 925A (pLB925A04, NC_012551), KB290 (pKB290-4, AP012171), and ATCC 367 (plasmid 1, NC_008498) | |
37 | 44.6 | 1242 | L. plantarum WCFS1 (pWCFS103, NC_006377) | |
100, 122 | 33.9 | 5879 | L. buchneri CD034 (pCD034-3, CP003044) and NRRL B-30929 (pLBUC01, NC_015420) | |
18, 22, 93, 108, 109, 113, 115, 143, 158, 162, 163 | 40.6 | 2797 | Several Lactobacillus spp. | |