Table 6 Unigenes involved in key biological steps of ovule, gamete and seed formation
Unigene | Gene | Biological process | DB source | Libraries of flower parts | Apomictic libraries | Sexual libraries | |||
|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | C | S/P | St | YB | mean (st.dev.) | mean (st.dev.) |
isotig28792 | HpANT | Sporophytic mutants with gametophytic defects and seed development and size regulation | 2; 8 | 1.5 | 0.0 | 0.0 | 3.0 | 0.0 (0. 0) | 0.9 (0.0) |
isotig03676 | HpBEL1 | Sporophytic mutants with gametophytic defects | 2 | 2.1 | 0.0 | 0.0 | 0.0 | 3.1 (0.4) | 1.8 (0.2) |
isotig24625 | HpINO | Sporophytic mutants with gametophytic defects | 2 | 10.5 | 0.0 | 0.0 | 0.0 | 4.4 (0.0) | 2.1 (0.3) |
isotig30848 | HpAGO9 | Cell specification and regulation of megasporogenesis | 1; 3; 4 | 0.0 | 2.3 | 0.0 | 2.4 | 4.2 (3.4) | 0.0 (0.0) |
isotig08685 | HpRBR | Cell specification and regulation of megagametogenesis | 1; 3; 4; G; T | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 (0.0) | 2.5 (0.3) |
isotig21033 | HpRDR6 | Regulation of megasporogenesis | 3; 4 | 2.5 | 1.4 | 1.1 | 5.5 | 3.9 (4.5) | 2.1 (0.0) |
isotig18046 | HpSGS3 | Regulation of megagametogenesis | 3; 4 | 8.5 | 7.1 | 6.7 | 8.1 | 5.3 (0.7) | 6.4 (5.5) |
isotig27635 | HpATREC8 | Cell specification and plant meiotic genes | 1; 6; T | 0.5 | 0.0 | 3.1 | 3.9 | 0.0 (0.0) | 1.9 (1.5) |
isotig06846 | HpDMC1.1 | Plant meiotic genes | 6; T | 1.0 | 0.0 | 2.6 | 3.4 | 1.7 (1.3) | 3.5 (1.0) |
isotig06845 | HpDMC1.2 | Plant meiotic genes | 6; T | 1.8 | 0.0 | 3.0 | 4.1 | 1.9 (1.7) | 4.1 (1.5) |
isotig30894 | HpMND1 | Plant meiotic genes | 6; G; T | 3.1 | 0.0 | 0.0 | 1.2 | 6.9 (6.4) | 1.1 (0.1) |
isotig31045 | HpMS5 | Plant meiotic genes | 6; T | 2.5 | 0.0 | 2.1 | 0.0 | 9.3 (10.6) | 0.0 (0.0) |
isotig32956 | HpAGP18 | Female gametogenesis, fertilization, seed development | 5 | 2.5 | 0.0 | 0.0 | 0.0 | 8.1 (9.3) | 1.4 (1.9) |
isotig10679 | HpAGO5.1 | Regulation of megagametogenesis | 7 | 3.7 | 0.6 | 6.1 | 2.0 | 4.6 (1.9) | 6.6 (3.4) |
isotig15447 | HpAGO5.2 | Regulation of megagametogenesis | 7 | 5.4 | 13.0 | 6.6 | 8.2 | 4.4 (1.0) | 4.6 (3.5) |
isotig24484 | HpMET1 | Regulation of megagametogenesis and seed development | 3; 4; 8 | 0.7 | 0.6 | 0.8 | 2.6 | 3.1 (1.7) | 2.0 (1.1) |
isotig09834 | HpDME.1 | Imprinted genes and imprinting related | 3; 4 | 0.8 | 0.0 | 5.3 | 0.4 | 0.0 (0.0) | 3.9 (2.7) |
isotig09835 | HpDME.2 | Imprinted genes and imprinting related | 3; 4 | 0.9 | 0.0 | 6.3 | 0.4 | 0.0 (0.0) | 4.6 (3.3) |
isotig31020 | HpMYB98 | Regulation of megagametogenesis, fertilization, seed development | 3; 4; 5; T | 0.0 | 5.8 | 0.0 | 0.0 | 0.6 (0.8) | 0.6 (0.8) |
isotig23549 | HpDVPE | Female gametogenesis, fertilization, seed development | 5 | 0.0 | 0.0 | 2.1 | 0.0 | 2.6 (0.5) | 3.9 (1.2) |
isotig33211 | HpFUS2 | Female gametogenesis, fertilization, seed development | 5 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 (0.0) | 6.1 (8.6) |
isotig25989 | HpILA | Female gametogenesis, fertilization, seed development | 5 | 11.2 | 9.4 | 7.5 | 3.7 | 6.9 (1.2) | 5.5 (6.8) |
isotig23192 | HpAGL32 | Female gametogenesis, fertilization, seed development | 5 | 14.3 | 0.0 | 0.0 | 0.0 | 7.9 (1.9) | 6.4 (2.1) |
isotig11347 | HpSERK1 | Gametogenesis | T | 5.1 | 0.4 | 1.9 | 2.1 | 5.8 (1.0) | 2.7 (0.2) |
isotig11348 | HpSERK2 | Gametogenesis | T | 2.9 | 2.5 | 1.8 | 5.0 | 5.0 (2.3) | 3.2 (0.2) |
isotig32841 | HpIAA32 | Maternal effect embryo arrest and gametogenesis | G; T | 0.8 | 0.0 | 0.0 | 0.0 | 4.8 (0.3) | 0.0 (0.0) |
isotig05393 | HpARF2 | Seed development and size regulation | 8 | 2.3 | 2.3 | 4.1 | 3.0 | 3.9 (0.4) | 7.5 (0.0) |
isotig29668 | HpAGL62 | Seed development and size regulation | 8 | 0.0 | 0.0 | 0.6 | 0.5 | 2.2 (1.7) | 1.0 (0.1) |
isotig29604 | HpTANMEI | Embryo defective phenotype and embryogenesis | G; T | 2.7 | 0.0 | 0.0 | 0.5 | 1.4 (0.6) | 0.0 (0.0) |
isotig25721 | HpAHP4 | Seed development and size regulation | 8 | 0.0 | 2.1 | 0.0 | 0.0 | 8.0 (1.3) | 18.6 (13.1) |