Table 3 Relative synonymous codon usage of ribosomal and highly expressed ORFs of the X. dendrorhous
From: Codon usage and codon context bias in Xanthophyllomyces dendrorhous
AA | Cod | RSCU | AA | Cod | RSCU | AA | Cod | RSCU | AA | Cod | RSCU |
|---|---|---|---|---|---|---|---|---|---|---|---|
Ala | GCU | 1.22 (1.40) | Gln | CAA | 0.83 (0.90) | Leu | CUC | 1.83 (1.53) | Ser | AGU | 0.40 (0.61) |
Ala | GCC | 1.91 (1.22) | Gln | CAG | 1.17 (1.10) | Leu | CUA | 0.22 (0.49) | Ser | AGC | 0.65 (0.63) |
Ala | GCA | 0.50 (0.74) | Glu | GAA | 0.56 (0.84) | Leu | CUG | 0.95 (0.88) | TER | UAA | 1.38 (1.03) |
Ala | GCG | 0.37 (0.64) | Glu | GAG | 1.44 (1.16) | Lys | AAA | 0.42 (0.75) | TER | UAG | 0.50 (0.81) |
Arg | CGU | 0.30 (0.51) | Gly | GGU | 1.39 (1.12) | Lys | AAG | 1.58 (1.25) | TER | UGA | 1.12 (1.16) |
Arg | CGC | 0.25 (0.29) | Gly | GGC | 0.70 (0.77) | Met | AUG | 1.00 (1.00) | Thr | ACU | 0.72 (1.03) |
Arg | CGA | 2.83 (2.10) | Gly | GGA | 1.46 (1.60) | Phe | UUU | 0.55 (0.74) | Thr | ACC | 2.00 (1.28) |
Arg | CGG | 0.30 (0.72) | Gly | GGG | 0.46 (0.50) | Phe | UUC | 1.45 (1.26) | Thr | ACA | 0.50 (0.86) |
Arg | AGA | 1.28 (1.48) | His | CAU | 0.79 (1.06) | Pro | CCU | 1.34 (1.49) | Thr | ACG | 0.78 (0.82) |
Arg | AGG | 1.04 (0.90) | His | CAC | 1.21 (0.94) | Pro | CCC | 1.09 (0.77) | Trp | UGG | 1.00 (1.00) |
Asn | AAU | 0.41 (0.68) | Ile | AUU | 0.60 (0.85) | Pro | CCA | 0.56 (0.87) | Tyr | UAU | 0.41 (0.80) |
Asn | AAC | 1.59 (1.32) | Ile | AUC | 2.16 (1.82) | Pro | CCG | 1.01 (0.87) | Tyr | UAC | 1.59 (1.20) |
Asp | GAU | 0.99 (1.13) | Ile | AUA | 0.24 (0.32) | Ser | UCU | 1.08 (1.46) | Val | GUU | 1.04 (1.10) |
Asp | GAC | 1.01 (0.87) | Leu | UUA | 0.19 (0.42) | Ser | UCC | 1.77 (1.18) | Val | GUC | 1.76 (1.59) |
Cys | UGU | 1.04 (1.03) | Leu | UUG | 0.91 (1.28) | Ser | UCA | 0.45 (0.92) | Val | GUA | 0.53 (0.48) |
Cys | UGC | 0.96 (0.97) | Leu | CUU | 1.90 (1.40) | Ser | UCG | 1.65 (1.19) | Val | GUG | 0.67 (0.82) |