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Table 3 Relative synonymous codon usage of ribosomal and highly expressed ORFs of the X. dendrorhous

From: Codon usage and codon context bias in Xanthophyllomyces dendrorhous

AA Cod RSCU AA Cod RSCU AA Cod RSCU AA Cod RSCU
Ala GCU 1.22 (1.40) Gln CAA 0.83 (0.90) Leu CUC 1.83 (1.53) Ser AGU 0.40 (0.61)
Ala GCC 1.91 (1.22) Gln CAG 1.17 (1.10) Leu CUA 0.22 (0.49) Ser AGC 0.65 (0.63)
Ala GCA 0.50 (0.74) Glu GAA 0.56 (0.84) Leu CUG 0.95 (0.88) TER UAA 1.38 (1.03)
Ala GCG 0.37 (0.64) Glu GAG 1.44 (1.16) Lys AAA 0.42 (0.75) TER UAG 0.50 (0.81)
Arg CGU 0.30 (0.51) Gly GGU 1.39 (1.12) Lys AAG 1.58 (1.25) TER UGA 1.12 (1.16)
Arg CGC 0.25 (0.29) Gly GGC 0.70 (0.77) Met AUG 1.00 (1.00) Thr ACU 0.72 (1.03)
Arg CGA 2.83 (2.10) Gly GGA 1.46 (1.60) Phe UUU 0.55 (0.74) Thr ACC 2.00 (1.28)
Arg CGG 0.30 (0.72) Gly GGG 0.46 (0.50) Phe UUC 1.45 (1.26) Thr ACA 0.50 (0.86)
Arg AGA 1.28 (1.48) His CAU 0.79 (1.06) Pro CCU 1.34 (1.49) Thr ACG 0.78 (0.82)
Arg AGG 1.04 (0.90) His CAC 1.21 (0.94) Pro CCC 1.09 (0.77) Trp UGG 1.00 (1.00)
Asn AAU 0.41 (0.68) Ile AUU 0.60 (0.85) Pro CCA 0.56 (0.87) Tyr UAU 0.41 (0.80)
Asn AAC 1.59 (1.32) Ile AUC 2.16 (1.82) Pro CCG 1.01 (0.87) Tyr UAC 1.59 (1.20)
Asp GAU 0.99 (1.13) Ile AUA 0.24 (0.32) Ser UCU 1.08 (1.46) Val GUU 1.04 (1.10)
Asp GAC 1.01 (0.87) Leu UUA 0.19 (0.42) Ser UCC 1.77 (1.18) Val GUC 1.76 (1.59)
Cys UGU 1.04 (1.03) Leu UUG 0.91 (1.28) Ser UCA 0.45 (0.92) Val GUA 0.53 (0.48)
Cys UGC 0.96 (0.97) Leu CUU 1.90 (1.40) Ser UCG 1.65 (1.19) Val GUG 0.67 (0.82)
  1. The RSCU values, including the ribosomal ORFs and the ORFs in the ≥1,000 group according to the HV grouping, are shown in parenthesis.