Table 2 Summary of sequence assembly and function annotation of the C. taliensis transcriptome
| Â | Number of sequences |
|---|---|
Assembly | Â |
Total number of unigenes | 67,923 |
Total bases (Mb) | 46.55 |
Mean unigene length (bp) | 685 |
N50 (bp) | 995 |
Number of unigene ( ≥500 bp) | 30,033 |
Number of unigene ( ≥1 kb) | 13,799 |
Annotation | Â |
Protein database searches | Â |
Transcript BLASTx against NR | 38,947 |
Transcript BLASTx against UniRef90 | 39,111 |
Transcript BLASTx against TAIR10 | 33,607 |
Transcript BLASTx against KOG | 22,350 |
Transcript BLASTx against Pfam | 20,748 |
All annotated transcript | 39,475 |
Transcripts matching all five databases | 13,698 |
Functional classification and pathway mapping | Â |
Transcripts annotated with Gene Ontology (GO) terms | 24,988 |
Transcripts assigned with Enzyme Commission (EC) numbers | 8,936 |
Transcript annotations against KEGG | 13,134 |