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Table 1 Transcriptome assembly statistics

From: Novel insights into the insect trancriptome response to a natural DNA virus

  SOAP transdenovo Trinity
  kmer size =25 kmer size=31 Edge threshold =0.05 Edge threshold =0.16
Max contig length 46,673 46,631 62,936 62,936
Mean contig length 1,053 1,036 1,037 905
Standard deviation of contig length 1,595 1,559 1,736 1,542
Median contig length 424 428 393 375
N50 contig length 2,539 2,452 2,617 2,125
Number of contigs 80,425 82,753 135,990 127,665
Number of contigs>=1kb 20,249 20,725 32,900 26,818
Number of contigs in N50 8,933 9,330 14,198 13,689
Number of bases in all contigs 84,708,481 85,762,961 140,975,202 115,544,987
Number of bases in contigs>=1kb 60,770,939 60,961,055 101,519,875 77,125,576
GC Content of contigs 38.82% 38.95% 39.35% 38.96%