Table 2 Mapping statistics

Total # of fragments

376,604,607

376,604,607

376,604,607

376,604,607

Total # of mapping fragments

345,067,834

91.63

356,499,243

94.66

351,206,829

93.26

368,474,636

97.84

# of chr in reference

80,425

82,753

135,990

127,665

Uniquely mapping pairs

Concordant

236,768,017

68.61

252,262,424

70.76

240,006,041

68.34

260,088,477

70.59

Halfmapping

10,181,639

2.95

10,833,441

3.04

4,222,926

1.20

3,128,004

0.85

unpaired

1,674,474

0.49

2,975,582

0.83

758,404

0.22

925,244

0.25

Multiply mapping pairs

Concordant

93,559,753

27.11

87,279,976

24.48

103,451,332

29.46

100,980,778

27.41

halfmapping

2,102,511

0.61

2,270,699

0.64

1,287,909

0.37

1,710,051

0.46

unpaired

581,342

0.17

611,289

0.17

1,240,292

0.35

1,256,968

0.34

Translocated read pairs

concordant

0

0

0

0

Halfmapping

0

0

0

0

unpaired

0

0

0

0

Others

paired multimapping

35,508

0.01

33,876

0.01

48,569

0.01

53,351

0.01

paired unique inverted

116,861

0.03

84,905

0.02

65,638

0.02

71,371

0.02

paired unique long

25,618

0.01

50,100

0.01

7,667

0.00

8,165

0.00

paired unique scr

22,111

0.01

96,951

0.03

118,051

0.03

252,227

0.07

No mapping

31,536,773

9.14

20,105,364

5.64

25,397,778

7.23

8,129,971

2.21