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Table 1 Mapping statistics for quality filtered reads generated for embryogenic and leaf tissues

From: Global scale transcriptome analysis of Arabidopsis embryogenesis in vitro

  SE_5D SE_10D SE_15D WT_L
Total number of QC-passed reads 73882504 212208700 139910622 179025732
Total Number of mapped reads 75839181 222139250 148769022 183167937
Mapped percentage (%) 97.82 98.18 97.24 99.10
Read −1* 37996562 111267307 74522675 91775211
Read −2* 37842619 110871943 74246347 91392726
Total number of unmapped reads 1613269 3862501 2560237 1613269
Un-mapped percentage (%) 2.18 1.82 2.76 0.90
  1. *read-1 and read-2: forward and reverse primer derived reads.