Table 3 Top most differentially expressed TF encoding genes detected between embryo developmental time-points
From: Global scale transcriptome analysis of Arabidopsis embryogenesis in vitro
Gene ID | Log2 [FC] | TF family | Gene description |
|---|---|---|---|
Differentially expressed TFs between SE_5D and SE_10D | |||
AT5G27090 | 4.82 | MADS | Protein agamous-like 54 |
AT3G46070 | 3.58 | C2H2 | C2H2-type zinc finger family protein |
AT5G52600 | 3.52 | MYB | MYB82 |
AT5G40220 | 3.28 | MADS | Protein agamous-like 43 |
AT1G66420 | 3.27 | GeBP | DNA-binding storekeeper protein-related transcriptional regulator |
AT1G13260 | 3.26 | RAV | AP2/ERF and B3 domain-containing TF |
AT2G47190 | 3.09 | MYB | R2R3 MYB DNA binding domain TF (MYB2) |
AT3G56970 | 3.01 | bHLH | ORG2 (BHLH038) |
AT5G41570 | 3.00 | WRKY | WRKY transcription factor 24 |
AT5G15150 | 2.83 | Homeobox | Homeobox-leucine zipper protein HAT7 (HB-3) |
AT3G11110 | −5.91 | C3H | RING-H2 finger protein ATL66 |
AT4G09960 | −4.50 | MADS | Agamous-like MADS-box protein AGL11 |
AT1G75250 | −4.06 | MYB-related | Protein RADIALIS-like 6 |
AT1G25310 | −3.79 | bHLH | Transcription factor MEE8 |
AT2G27940 | −3.73 | C3H | RING-H2 finger protein ATL57 |
AT1G19510 | −3.65 | MYB-related | Protein RADIALIS-like 5 |
AT1G56650 | −3.64 | MYB | Transcription factor MYB75 |
AT3G06120 | −3.23 | bHLH | Transcription factor MUTE |
AT5G46830 | −3.22 | bHLH | Calcium-binding transcription factor NIG1 |
AT5G53200 | −3.21 | MYB-related | Transcription factor TRY |
Differentially expressed TFs between SE_10D and SE_15D | |||
AT2G21900 | 6.41 | WRKY | WRKY DNA-binding protein 59 |
AT5G01900 | 5.04 | WRKY | WRKY DNA-binding protein 62 |
AT2G40750 | 4.80 | WRKY | WRKY DNA-binding protein 54 |
AT5G65790 | 4.78 | MYB | MYB domain protein 68 |
AT1G74080 | 4.28 | MYB | MYB domain protein 122 |
AT1G02230 | 4.28 | NAC | NAC domain containing protein 4 |
AT2G45660 | 4.27 | MADS | AGAMOUS-like 20; Involved in controlling flowering |
AT5G22570 | 4.17 | WRKY | WRKY DNA-binding protein 38 |
AT5G64810 | 4.16 | WRKY | WRKY DNA-binding protein 51 |
AT1G66600 | 4.13 | WRKY | WRKY transcription factor 63; Involved in regulation of plant responses to ABA and drought stress |
AT2G34820 | −15.05 | bHLH | Basic helix-loop-helix 53 |
AT5G39750 | −7.70 | MADS | AGAMOUS-like 81 |
AT1G24260 | −4.41 | MADS | MADs box transcription factor SEPALLATA3 |
AT3G50330 | −3.80 | bHLH | HECATE 2 |
AT4G00120 | −3.67 | bHLH | INDEHISCENT |
AT5G14010 | −3.21 | C2H2 | Zinc finger protein KNUCKLES; Mediates the repression of WUS in floral meristem determinacy control |
AT4G30180 | −3.00 | bHLH | Hypothetical protein |
AT4G26150 | −3.00 | C2C2-Gata | Putative GATA transcription factor 22 |
AT1G25250 | −2.83 | C2H2 | Indeterminate-domain 16 |
AT4G29030 | −2.82 | Trihelix | Putative membrane lipoprotein |