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Table 2 Coverage of four Cryptosporidium hominis genomes sequenced in this study and sequence similarities to published C. parvum (IOWA) and C. hominis (TU502) genomes

From: Comparative genomic analysis reveals occurrence of genetic recombination in virulent Cryptosporidium hominis subtypes and telomeric gene duplications in Cryptosporidium parvum

Chromosome C. parvum length (bp) 37999 (IbA10G2) 30976 (IaA28R4) 30974 (IbA10G2) 33537 (IaA28R4) TU502 (IaA25R3)
Contigs mapped Length (bp) Coverage (%) Similarity to IOWA (%) Similarity to TU502 (%) Contigs mapped Length (bp) Coverage (%) Similarity to IOWA (%) Similarity to TU502 (%) Contigs mapped Length (bp) Coverage (%) Similarity to IOWA (%) Similarity to TU502 (%) Contigs mapped Length (bp) Coverage (%) Similarity to IOWA (%) Similarity to TU502 (%) Contigs mapped Length (bp) Coverage (%) Similarity to IOWA (%)
1 875659 15 867575 99.08 96.8 99.79 1 873289 99.73 96.81 99.86 36 863586 98.62 96.84 99.82 54 840604 96 96.93 99.86 124 859754 98.18 96.88
2 985969 7 987017 100.11 96.79 99.58 8 983830 99.78 96.82 99.81 41 970191 98.4 96.81 99.77 69 944487 95.8 96.9 99.82 115 946071 95.95 96.73
3 1099352 13 1098355 99.91 96.89 99.62 13 1096430 99.73 96.86 99.79 40 1081251 98.35 96.86 99.75 87 1064015 96.78 96.98 99.81 158 1079381 98.18 96.78
4 1104417 3 1103687 99.93 96.76 99.72 4 1105075 100.06 96.76 99.8 86 1056974 95.7 96.81 99.74 123 1024384 92.75 96.93 99.82 195 1007110 91.19 96.77
5 1080900 13 1092751 101.1 96.78 99.74 11 1107822 102.49 96.78 99.84 71 1013283 93.74 96.93 99.77 118 940540 87.01 97.09 99.83 186 972978 90.02 96.79
6 1332857 5 1304591 97.88 96.91 99.76 2 1298888 97.45 96.93 99.86 66 1263267 94.78 97.01 99.76 124 1237394 92.84 97.09 99.83 192 1240122 93.04 96.82
7 1278458 5 1268482 99.22 97.19 99.79 4 1269257 99.28 97.2 99.87 27 1267106 99.11 97.18 99.82 79 1258429 98.43 97.25 99.88 124 1282777 100.34 97.18
8 1344712 3 1319172 98.1 96.78 99.76 2 1319721 98.14 96.8 99.83 57 1300516 96.71 96.81 99.78 113 1281066 95.26 96.9 99.81 175 1304075 96.98 96.74
Total 9102324 64 9041990 99.34 96.86 99.72 45 9054312 99.47 96.87 99.83 424 8816174 96.93 96.9 99.78 767 8590919 94.36 97 99.83 1269 8692268 95.49 96.84