Skip to main content

Table 2 Comparative summary statistics of the MinION® and corresponding NaS reads

From: Genome assembly using Nanopore-guided long and error-free DNA reads

   1D reads 2D reads
MinION® reads    
aligned using LAST # reads 57,911 8,581
  # reads (>10Kb) 3,609 3,866
  Cumulative size (Mbp) 118.9 86.1
  Average size (bp) 2,052 10,033
  N50 size (bp) 11,058 12,141
  Max size (bp) 123,135 58,704
  Aligned reads 9,623 (16.6%) 7,140 (83.2%)
  Mean identity percent 56.6% 74.5%
  Max alignment size 54,158 58,656
  Error-free reads 0 0
NaS reads aligned using BWA mem # reads 4,717 6,558
  # reads (>10Kb) 167 3,045
  Cumulative size (Mbp) 17.2 65.6
  Average size (bp) 3,639 10,008
  N50 size (bp) 4,273 12,685
  Max size (bp) 31,283 59,863
  Aligned reads 4,717 (100%) 6,558 (100%)
  Mean identity percent 99.9937% 99,9893%
  Max alignment size 31,283 59,863
  Error-free reads 4,620 (97.9%) 6,307 (96.2%)