Skip to main content

Table 3 Summary of transposable and repetitive elements in the D. noxia genome

From: The genome of Diuraphis noxia, a global aphid pest of small grains

Element type Number of elements Length occupied Percentage of genome A Percentage of genome B
SINEs 10,729 2,578,098 0.65 0.87
  ALUs 0 0 0 0
  MIRs 1 58 0 0
LINEs 8,415 1,047,278 0.27 0.35
  LINE1 623 33,258 0.01 0.01
  LINE2 2,705 206,618 0.05 0.07
  L3/CR1 695 95,452 0.02 0.03
LTR elements 6,338 1,319,571 0.33 0.44
  ERVL 61 3,546 0 0
  ERV_classI 443 24,913 0.01 0.01
  ERV_classII 359 17,479 0 0
DNA elements 71,820 12,373,070 3.13 4.17
  hAT-Charlie 3,564 466,416 0.12 0.16
  TcMar-Tigger 139 15,935 0 0
Unclassified: 70,950 14,872,045 3.76 5.02
Total Interspersed Repeats NA 32,190,062 8.14 10.85
Small RNA 256 19,670 0 0.01
Satellites 628 48,648 0.01 0.02
Simple repeats: 246,285 11,528,041 2.92 3.89
Low complexity: 31,355 1,595,105 0.40 0.54
Total:   45,381,526 11.47 15.31
  1. APercentage of total genome, including N-containing scaffold gaps, occupied by the indicated transposable and repeat elements. BPercentage of total genome, excluding N-containing scaffold gaps, occupied by the indicated transposable and repeat elements.