Table 1 Selected variant positions
Line code and phenotype class | Expected mode of inheritance | Selected genotype in vcf file | Number of animals sequenced | Private variant positions | Variant positions in exons | Variant positions in exons (one per gene) | Variants in linkage region | Variant positions with ENU- type base changes | Variant positions in concordance with phenotype |
|---|---|---|---|---|---|---|---|---|---|
Line 1 body weight | Recessive | 1/1 | 4 | 3 | 1 | 1 | No region available | 1 | No position confirmed |
Line 2 body size | Dominant | 0/1 | 4 | 9 | 3 | 3 | No region available | 2 | 1 (confirmed by Sanger) |
Line 3 hormone level | Dominant | 0/1 | 4 | 9 | 3 | 3 | No region available | 2 | 1 position in line for validation |
Line 4 enzymatic level | Recessive | 1/1 | 4 | 1 | 1 | 1 | 1 | 0 | 1 position related to the phenotype |
Line 5 hormone level | Dominant | 0/1 | 2 | 136 | 10 | 10 | No region available | 6 | 4 positions related to the phenotype |
Line 6 dental phenotype | Dominant | 0/1 | 2 | 176 | 12 | 10 | No region available | 4 | 1 (confirmed by Sanger, manuscript under review) |
Line 7 body weight | Dominant | 0/1 | 2 | 64 | 14 | 12 | 1 | 5 | 1 (confirmed by Sanger) |
Line 8 body size | Dominant | 0/1 | 2 | 100 | 23 | 23 | 1 | 16 | No position confirmed |