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Table 2 Salmonella Typhimurium 14028s TSSs and TTSs identified from 54 RNA-seq libraries

From: An empirical strategy to detect bacterial transcript structure from directional RNA-seq transcriptome data

 

Transcript Feature 1

Gene 2

TSS

  

 Total number

24,516

2,888

 Significant number3

2,764

1,331

TTS

  

 Total number

30,118

1,467

 Significant number3

3,026

844

  1. 1Total number of transcript features identified; for each gene, different TSSs or TTSs could be identified from different RNA-seq libraries.
  2. 2The number of S. Typhimurium 14028s protein-encoding genes whose TSSs or TTSs were identified.
  3. 3Binomial tests based on read-depth and reproducibility between libraries were performed to find out the TSSs or TTSs that were statistically reliable. The significance level was set as FDR < 0.05 for either test.
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BMC Genomics

ISSN: 1471-2164

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