Skip to main content

Table 1 Classification of retrotransposons identified in Paracoccidioides genomes

From: Identification and characterization of expressed retrotransposons in the genome of the Paracoccidioides species complex

Classification

Identity of the best hit

Element

Class

Order

Superfamily/clade

Organism

% Similarity

RtPc1

I (Retrotransposons)

LTR

Gypsy

Aspergillus fumigatus

64.9

RtPc2

I (Retrotransposons)

LTR

Gypsy

Aspergillus nidulans

64.4

RtPc3

I (Retrotransposons)

LTR

Copia

Drosophila bipectinata

68.6

RtPc4

I (Retrotransposons)

LTR

Copia

Coccidioides posadasii

62.6

RtPc5

I (Retrotransposons)

LINE

I/ Tad-like*

Blumeria graminis

63.9

  1. *as mentioned in the Results, element LINE-Tad-like_RtPc5 was identical to the non-LTR retrotransposon of the Tad-CgT family, which was previously identified as element PbNLR1 by Novikova et al. [25].
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us