Table 1 Genome- wide CAZyme gene and domain content for twenty-two plant species
From: Comparative analysis of plant carbohydrate active enZymes and their role in xylogenesis
Organism* | Genome Size (Mbp) | #Genes | #CAZyme genes | %CAZyme genes | #CAZyme domains | # GTs | # GHs | # PLs | # CEs | # CBMs | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|
Volvox carteri (VolCa) | 138 | 14,520 | 490 | 3.37 | 645 | 283 | 85 | 4 | 65 | 102 | [67] |
Chlamydomonas reinhardtii (ChlRe) | 121 | 15,143 | 574 | 3.79 | 741 | 367 | 85 | 4 | 76 | 87 | [68] |
Physcomitrella patens (PhyPa) | 480 | 35,938 | 1,236 | 3.44 | 1,519 | 664 | 392 | 41 | 250 | 172 | [69] |
Selaginella moellendorffii (SelMo) | 212 | 22,285 | 1,224 | 5.49 | 1,476 | 637 | 370 | 27 | 281 | 161 | [70] |
Brachypodium distachyon (BraDi) | 272 | 25,532 | 1,418 | 5.55 | 1,723 | 764 | 394 | 20 | 334 | 211 | [71] |
Oryza sativa (OrySa) | 420 | 42,109 | 1,724 | 4.09 | 2,040 | 891 | 498 | 29 | 389 | 233 | [72] |
Zea mays (ZeaMa) | 2,300 | 30,579 | 1,920 | 6.28 | 2,256 | 1,026 | 578 | 22 | 394 | 236 | [73] |
Sorghum bicolor (SorBi) | 730 | 34,496 | 1,751 | 5.08 | 1,431 | 784 | 474 | 23 | 288 | 171 | [74] |
Aquilegia coerulea (AquCo) | 302 | 24,823 | 1,554 | 6.26 | 1,464 | 657 | 471 | 32 | 360 | 141 | [75] |
Mimulus guttatus (MimGu) | 312 | 26,718 | 1,671 | 6.25 | 1,992 | 680 | 503 | 43 | 363 | 201 | [76] |
Vitis vinifera (VitVi) | 490 | 30,434 | 1,424 | 4.68 | 1,710 | 664 | 525 | 39 | 305 | 177 | [77] |
Eucalyptus grandis (EucGr) | 641 | 36,376 | 2,542 | 6.99 | 3,334 | 1,233 | 823 | 54 | 534 | 360 | [37] |
Citrus clementina (CitCl) | 301 | 24,533 | 1,971 | 8.03 | 2,328 | 862 | 572 | 41 | 413 | 205 | [78] |
Citrus sinensis (CitSi) | 319 | 25,376 | 2,439 | 9.61 | 2,927 | 1,049 | 735 | 52 | 498 | 267 | [78] |
Carica papaya (CarPa) | 372 | 27,873 | 1,131 | 4.06 | 1,341 | 466 | 380 | 25 | 209 | 124 | [79] |
Arabidopsis thaliana (AraTh) | 119 | 27,400 | 1,505 | 5.49 | 1,787 | 697 | 483 | 49 | 341 | 217 | [80] |
Prunus persica (PruPe) | 227 | 27,852 | 1,591 | 5.71 | 1,843 | 654 | 491 | 34 | 337 | 180 | [81] |
Cucumis sativus (CucSa) | 243 | 26,682 | 2,157 | 8.08 | 2,157 | 779 | 555 | 36 | 355 | 184 | [82] |
Glycine max (GlyMa) | 975 | 54,175 | 2,839 | 5.24 | 3,429 | 1,412 | 917 | 69 | 645 | 386 | [83] |
Populus trichocarpa (PopTr) | 422 | 41,335 | 2,252 | 5.45 | 2,677 | 1,057 | 713 | 55 | 479 | 373 | [84] |
Ricinus communis (RicCo) | 350 | 31,237 | 1,540 | 4.93 | 1,864 | 605 | 486 | 36 | 328 | 186 | [85] |
Manihot esculenta (ManEs) | 533 | 30,666 | 1,957 | 6.38 | 2,365 | 825 | 616 | 42 | 377 | 239 | [86] |