Position
a
|
TIGR4:19F
|
SpnYL101
|
CDS
|
Codon
b
|
SNP Name
c
|
---|
150259 | A | C | SP_0152 | N | SP_0152:C380A |
626569 | C | T | SP_0655 | S | SP_0655:C906T |
1052463 | A | G | SP_1119 | N | SP_1119:G652A |
1542955 | G | A | SP_1645 | N | SP_1645:C1019T |
1543998 | G | A | - | I | A1543998G |
-
aPosition corresponds to reference TIGR4 genome sequence (GenBank accession: AE005672).
-
bIndicator of the effect of the single nucleotide difference: non-synonymous codon change (N), synonymous codon change (S), or change in the inter-gene region (I).
-
cSNP located in a CDS is named according to the CDS name. After the CDS name, the first letter is the nucleotide sequence in the coding strand of the TIGR4 genome; the number represents the nucleotide location within the CDS; and the second letter represents the alternative nucleotide sequence. SNP located in the inter-gene region is named by a letter (nucleotide sequence in the TIGR4 genome), followed by a number (the SNP position) and another letter (the alternative nucleotide sequence).