Identification of pneumococcal colonization determinants in the stringent response pathway facilitated by genomic diversity

Table 1 SNPs identified between TIGR4:19F and SpnYL101

Position ^a	TIGR4:19F	SpnYL101	CDS	Codon ^b	SNP Name ^c
150259	A	C	SP_0152	N	SP_0152:C380A
626569	C	T	SP_0655	S	SP_0655:C906T
1052463	A	G	SP_1119	N	SP_1119:G652A
1542955	G	A	SP_1645	N	SP_1645:C1019T
1543998	G	A	-	I	A1543998G

^aPosition corresponds to reference TIGR4 genome sequence (GenBank accession: AE005672).
^bIndicator of the effect of the single nucleotide difference: non-synonymous codon change (N), synonymous codon change (S), or change in the inter-gene region (I).
^cSNP located in a CDS is named according to the CDS name. After the CDS name, the first letter is the nucleotide sequence in the coding strand of the TIGR4 genome; the number represents the nucleotide location within the CDS; and the second letter represents the alternative nucleotide sequence. SNP located in the inter-gene region is named by a letter (nucleotide sequence in the TIGR4 genome), followed by a number (the SNP position) and another letter (the alternative nucleotide sequence).

ISSN: 1471-2164