Table 5 BLASTX alignment of coding sequences encoded by the novel LTR retrotransposons with TREP database
From: Characterization of repetitive DNA landscape in wheat homeologous group 4 chromosomes
LTR retrotransposon | TREP protein code 1 | LTR retrotransposon associated 2 | Score 3 (bits) | Identity 4 | Conservative substitutions 5 | Coverage 6 |
|---|---|---|---|---|---|---|
RLC_Genoveva_JROL01007197 | PTREP238 | TREP3154 | 1130 | 64% | 78% | 84% |
(1515 aa) | Copia, RLC_Olivia_42j2-1 | |||||
RLC_Carmen_JROL01007734 | PTREP238 | TREP3154 | 879 | 54% | 67% | 75% |
(1515 aa) | Copia, RLC_Olivia_42j2-1 | |||||
RLC_Facunda_JROL01000922 | PTREP120 | TREP2012 | 1154 | 58% | 74% | 85% |
(1121 aa) | Copia, RLC_Zenia_AY853252-1 | |||||
RLG_Francisca_JROL01008273 | PTREP249 | TREP3203 | 387 | 32% | 49% | 93% |
(1536 aa) | Gypsy, RLG_Latidu_10k23-1 | |||||
RLX_Victoria_JROL01006440 | PTREP64 | TREP99 | 130 | 37% | 58% | 20% |
(1717 aa) | Gypsy,RLG_Cereba_AY040832-2 | |||||
RLX_Gabrielle_JROL01007833 | PTREP63 | TREP98 | 104 | 32% | 51% | 22% |
(1520 aa) | Gypsy, RLG_Cereba_AY040832-1 |