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Table 5 CHIP-seq peaks in cis-NATs *

From: The distribution and evolution of Arabidopsis thaliana cis natural antisense transcripts

  # overlapping CHIP seq peaks # of overlapping CHIP seq peaks in cases with significant sequence conservation # of overlapping CHIP seq peaks in cases with conservation of expression in A. lyrata
TAIR data set 209 ¶ 81 87
Matsui2008 2916 ¶ 999 †† 1014 †
Okamoto2010 1060 ¶ 377 ††† 313
  1. * Counts are for individual non-identical CHIP-seq peaks. Significance of enrichment of CHIP-seq peaks using hypergeometric probability:
  2. †, P = 0.02 (non-significant if a HB correction is applied, see Table 3), †† P = 0.001, ††† P < 0.0001.
  3. ¶ These total numbers of CHIP-seq peaks are highly significantly enriched compared to randomly sampled near-gene DNA (P < 0.00001, normal statistics). To assess this, for each of the three actual data sets listed, 500 samples of near-gene DNA of the same distribution of sizes and position relative to neighbour genes as the actual set were generated (as described in the Methods ).