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Table 1 Transcriptome sequencing statistics

From: Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica

  Precompetent larvae Competent larvae Juvenile Adult Adult deep
Reads 42,273,865 43,699,007 41,677,487 43,098,690 125,880,671
Quality trimmed reads 39,234,338 40,546,526 38,587,047 39,976,627 116,384,700
Assembled transcripts 107,725 122,306 101,432 112,187 230,181
Average transcript length 816 738 706 716 1,278
Longest transcript 14,660 12,052 9,354 16,961 29,513
Mapped Transcripts 63,681 64,826 61,149 65,377 76,045
% Mapped/Assembled 59.11% 53.00% 60.29% 58.28% 33.04%
Average mapped transcript 738 729 673 686 918
Longest mapped transcript 14,393 12,052 24,959 16,954 29,166
Total transcripts mapped to genome 63,681 64,826 61,149 65,377 76,045
Total coverage (% genome) 28.32% 27.92% 29.24% 30.31% 21.62%
Used for PASA Yes Yes Yes Yes No