Table 3 Allelic and genotypic frequencies of the SNPs (2,024 cows)
Gene | f(C) | f(G) | f(CC) | f(CG) | f(GG) | |||||
|---|---|---|---|---|---|---|---|---|---|---|
Brahman | TC | Brahman | TC | Brahman | TC | Brahman | TC | Brahman | TC | |
LOC100138021 | 0.10 | 0.78 | 0.90 | 0.22 | 0.01 | 0.60 | 0.19 | 0.36 | 0.80 | 0.04 |
f(A) | f(T) | f(AA) | f(AT) | f(TT) | ||||||
TEKT4 | 0.82 | 0.38 | 0.18 | 0.62 | 0.67 | 0.14 | 0.31 | 0.49 | 0.02 | 0.37 |
CYLC1 | 0.47 | 0.13 | 0.53 | 0.87 | 0.22 | 0.02 | 0.49 | 0.21 | 0.29 | 0.77 |
f(A) | f(G) | f(AA) | f(AG) | f(GG) | ||||||
CENPI | 0.92 | 0.32 | 0.08 | 0.68 | 0.86 | 0.11 | 0.12 | 0.42 | 0.02 | 0.47 |
TEX11_38 | 0.82 | 0.23 | 0.18 | 0.77 | 0.68 | 0.05 | 0.28 | 0.35 | 0.04 | 0.60 |
TEX11_696 | 0.81 | 0.22 | 0.19 | 0.78 | 0.67 | 0.05 | 0.29 | 0.35 | 0.04 | 0.60 |
AR | 0.47 | 0.15 | 0.53 | 0.85 | 0.21 | 0.02 | 0.52 | 0.26 | 0.27 | 0.72 |
f(C) | f(T) | f(CC) | f(CT) | f(TT) | ||||||
NXF2 | 0.60 | 0.14 | 0.40 | 0.86 | 0.36 | 0.02 | 0.48 | 0.21 | 0.16 | 0.77 |
UXT | 0.59 | 0.94 | 0.41 | 0.06 | 0.35 | 0.88 | 0.48 | 0.12 | 0.17 | 0 |
SPACA5 | 0.93 | 0.77 | 0.07 | 0.23 | 0.86 | 0.59 | 0.13 | 0.36 | 0.01 | 0.05 |
TAF7L | 0.10 | 0.78 | 0.90 | 0.22 | 0.01 | 0.60 | 0.18 | 0.36 | 0.81 | 0.04 |