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Table 4 SNP association analysis in bull population (andrological traits)

From: Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle

Trait

Gene where the SNP is located

p-value

Allele

Effect

SE

%Va

PNS

PLAG1

0.439

G

0.0079

0.0102

0.24

 

TEKT4

0.355

A

0.0097

0.0105

0.28

 

LOC100138021

0.011

G

0.0209

0.0082

2.73

 

CENPI

0.017

A

0.0180

0.0075

1.93

 

TAF7L

0.037

T

0.0173

0.0082

2.31

 

NXF2

0.159

C

0.0120

0.0086

0.82

 

CYLC1

0.976

A

0.0003

0.0920

0.01

 

TEX11_38

1.000

A

0.0000

0.0080

0.00

 

AR

0.217

A

0.0110

0.0088

0.45

 

UXT

0.313

T

0.0116

0.0114

0.43

 

SPACA5

0.670

T

0.0035

0.0084

0.03

SC24

PLAG1

0.144

G

0.1818

0.1235

0.31

 

TEKT4

0.307

A

0.1296

0.1263

0.06

 

LOC100138021

<0.001

G

0.5966

0.0968

2.13

 

CENPI

<0.001

A

0.3729

0.0898

0.74

 

TAF7L

<0.001

T

0.6310

0.0980

2.42

 

NXF2

<0.001

C

0.4086

0.1022

0.65

 

CYLC1

<0.001

A

0.7580

0.1040

2.83

 

TEX11_38

<0.001

A

0.9929

0.0931

8.23

 

AR

<0.001

A

0.8614

0.1037

4.59

 

UXT

<0.001

T

0.7374

0.1385

1.74

 

SPACA5

0.088

T

0.1760

0.1024

0.17

SC18

PLAG1

0.053

G

0.2583

0.1326

0.62

 

TEKT4

0.520

A

0.0975

0.1357

0.03

 

LOC100138021

<0.001

G

0.8548

0.1025

4.12

 

CENPI

<0.001

A

0.6401

0.0953

2.32

 

TAF7L

<0.001

T

0.9212

0.1023

4.88

 

NXF2

<0.001

C

0.5537

0.1095

1.10

 

CYLC1

<0.001

A

0.8290

0.1176

2.93

 

TEX11_38

<0.001

A

1.0550

0.0993

9.02

 

AR

<0.001

A

0.8104

0.1123

3.83

 

UXT

<0.001

T

0.6638

0.1497

1.20

 

SPACA5

0.004

T

0.3210

0.1096

0.59

SC12

PLAG1

0.035

G

0.2899

0.1363

1.13

 

TEKT4

0.110

A

0.2260

0.1405

0.35

 

LOC100138021

<0.001

G

0.9900

0.1041

9.23

 

CENPI

<0.001

A

0.6842

0.0977

4.35

 

TAF7L

<0.001

T

1.0460

0.1040

10.66

 

NXF2

<0.001

C

0.6755

0.1123

3.12

 

CYLC1

<0.001

A

0.8582

0.1197

4.96

 

TEX11_38

<0.001

A

1.0540

0.1030

13.47

 

AR

<0.001

A

0.8153

0.1156

5.94

 

UXT

<0.001

T

0.5491

0.1535

1.16

 

SPACA5

0.062

T

0.2126

0.1130

0.37

  1. Significance (p-value), allelic substitution effect (effect) for the named allele of each SNP, its standard error (SE) and the percentage of additive genetic variance (%Va) explained by the genotypes of each SNP on production of normal sperm at 24 months (PNS), scrotal circumference at 12 months (SC12), at 18 months (SC18) and at 24 months of age (SC24). Significantly associated <0.001 are highlighted in bold. The p-values are uncorrected.
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BMC Genomics

ISSN: 1471-2164

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