Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle

BMC Genomics

Table 6 SNP association analysis in bull population (growth traits)

Trait	Gene where the SNP is located	p-value	Allele	Effect	SE
BW	PLAG1	<.001	G	−1.714	0.301
	TEKT4	0.786	A	0.084	0.319
	LOC100138021	<.001	G	−0.847	0.234
	CENPI	0.394	A	0.189	0.222
	TAF7L	0.001	T	0.761	0.2355
	NXF2	0.107	C	−0.429	0.264
	CYLC1	<.001	A	−1.237	0.262
	TEX11_38	<.001	A	1.586	0.223
	AR	<.001	A	1.368	0.271
	UXT	<.001	T	1.391	0.363
	SPACA5	<.001	T	−1.130	0.250
W200	PLAG1	0.006	G	−4.151	1.490
	TEKT4	0.552	A	−0.907	1.538
	LOC100138021	0.153	G	−1.639	1.139
	CENPI	0.946	A	−0.068	1.082
	TAF7L	0.516	T	0.750	1.161
	NXF2	0.807	C	−0.303	1.285
	CYLC1	0.037	A	−2.759	1.307
	TEX11_38	0.014	A	2.767	1.120
	AR	0.324	A	1.342	1.355
	UXT	0.629	T	0.844	1.77
	SPACA5	0.013	T	−3.033	1.21
W400	PLAG1	0.076	G	−3.064	1.712
	TEKT4	0.9	A	0.211	1.780
	LOC100138021	0.193	G	−1.705	1.3
	CENPI	0.742	A	−0.400	1.244
	TAF7L	0.515	T	0.858	1.326
	NXF2	0.492	C	−1.009	1.474
	CYLC1	0.306	A	−1.543	1.503
	TEX11_38	0.047	A	2.591	1.291
	AR	0.205	A	2.016	1.580
	UXT	0.829	T	−0.416	2.007
	SPACA5	0.068	T	−2.567	1.395
W600	PLAG1	0.478	G	−1.490	2.108
	TEKT4	0.784	A	−0.575	2.160
	LOC100138021	0.164	G	−2.265	1.614
	CENPI	0.897	A	−0.187	1.515
	TAF7L	0.655	T	0.717	1.629
	NXF2	0.464	C	−1.327	1.815
	CYLC1	0.218	A	−2.292	1.85
	TEX11_38	0.008	A	4.186	1.571
	AR	0.12	A	2.964	1.888
	UXT	0.25	T	2.886	2.496
	SPACA5	0.091	T	−2.946	1.725

Significance (p-value), allelic substitution effect (Effect) for the named allele of each SNP and its standard error (SE) of the genotypes of each SNP on birth weight (BW), weight at 200 days (W200), weight at 400 days (W400) and weight at 600 days (W600). Significantly associated <0.05 are highlighted in bold. The p-values are uncorrected.

ISSN: 1471-2164