Skip to main content

Table 6 SNP association analysis in bull population (growth traits)

From: Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle

Trait Gene where the SNP is located p-value Allele Effect SE
BW PLAG1 <.001 G −1.714 0.301
  TEKT4 0.786 A 0.084 0.319
  LOC100138021 <.001 G −0.847 0.234
  CENPI 0.394 A 0.189 0.222
  TAF7L 0.001 T 0.761 0.2355
  NXF2 0.107 C −0.429 0.264
  CYLC1 <.001 A −1.237 0.262
  TEX11_38 <.001 A 1.586 0.223
  AR <.001 A 1.368 0.271
  UXT <.001 T 1.391 0.363
  SPACA5 <.001 T −1.130 0.250
W200 PLAG1 0.006 G −4.151 1.490
  TEKT4 0.552 A −0.907 1.538
  LOC100138021 0.153 G −1.639 1.139
  CENPI 0.946 A −0.068 1.082
  TAF7L 0.516 T 0.750 1.161
  NXF2 0.807 C −0.303 1.285
  CYLC1 0.037 A −2.759 1.307
  TEX11_38 0.014 A 2.767 1.120
  AR 0.324 A 1.342 1.355
  UXT 0.629 T 0.844 1.77
  SPACA5 0.013 T −3.033 1.21
W400 PLAG1 0.076 G −3.064 1.712
  TEKT4 0.9 A 0.211 1.780
  LOC100138021 0.193 G −1.705 1.3
  CENPI 0.742 A −0.400 1.244
  TAF7L 0.515 T 0.858 1.326
  NXF2 0.492 C −1.009 1.474
  CYLC1 0.306 A −1.543 1.503
  TEX11_38 0.047 A 2.591 1.291
  AR 0.205 A 2.016 1.580
  UXT 0.829 T −0.416 2.007
  SPACA5 0.068 T −2.567 1.395
W600 PLAG1 0.478 G −1.490 2.108
  TEKT4 0.784 A −0.575 2.160
  LOC100138021 0.164 G −2.265 1.614
  CENPI 0.897 A −0.187 1.515
  TAF7L 0.655 T 0.717 1.629
  NXF2 0.464 C −1.327 1.815
  CYLC1 0.218 A −2.292 1.85
  TEX11_38 0.008 A 4.186 1.571
  AR 0.12 A 2.964 1.888
  UXT 0.25 T 2.886 2.496
  SPACA5 0.091 T −2.946 1.725
  1. Significance (p-value), allelic substitution effect (Effect) for the named allele of each SNP and its standard error (SE) of the genotypes of each SNP on birth weight (BW), weight at 200 days (W200), weight at 400 days (W400) and weight at 600 days (W600). Significantly associated <0.05 are highlighted in bold. The p-values are uncorrected.